RNA–Protein interactions for RNA: ENST00000584186.1

CDK5RAP3-233, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 482 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-233	ENST00000584186	HIST3H3	Q16695	136 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MSMP	Q1L6U9	139 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	IFI44L	Q53G44	452 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ALG10	Q5BKT4	473 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ARMC4	Q5T2S8	1044 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ZNF730	Q6ZMV8	503 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LRP11	Q86VZ4	500 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HIPK1	Q86Z02	1210 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NRM	Q8IXM6	262 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	SLC30A7	Q8NEW0	376 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	OR51A7	Q8NH64	312 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NEU4	Q8WWR8	484 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LIPH	Q8WWY8	451 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	GEMIN6	Q8WXD5	167 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	FAM162A	Q96A26	154 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HSH2D	Q96JZ2	352 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	KCTD14	Q9BQ13	255 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	BPESC1	Q9GZL8	116 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CDH20	Q9HBT6	801 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	REV1	Q9UBZ9	1251 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	DUSP13	Q9UII6	198 aa		11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	FBN1	P35555	2871 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TRAV27	A0A087WT01	109 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	IGHV4-61	A0A0C4DH41	118 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186		A0A1W2PPW3	197 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186		M0R233	179 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	SYNGR3	O43761	229 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MAK	P20794	623 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ALDH3B1	P43353	468 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PLP2	Q04941	152 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	FMOD	Q06828	376 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MAD2L1BP	Q15013	274 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TRAM2	Q15035	370 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CHRFAM7A	Q494W8	412 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CBLL1	Q75N03	491 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	DPPA2	Q7Z7J5	298 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	OFCC1	Q8IZS5	231 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PAQR4	Q8N4S7	273 aa	Predicted RBP	11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ICA1L	Q8NDH6	482 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ZNF540	Q8NDQ6	660 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	RBM15B	Q8NDT2	890 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HDAC2	Q92769	488 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CMTM5	Q96DZ9	223 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	SEPHS2	Q99611	448 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MDFI	Q99750	246 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	KCNN2	Q9H2S1	579 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TXNIP	Q9H3M7	391 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MAN2C1	Q9NTJ4	1040 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	STX18	Q9P2W9	335 aa	Known RBP	11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	SLC7A8	Q9UHI5	535 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HIF3A	Q9Y2N7	669 aa		11.73	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CHD3	Q12873	2000 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LOC100289279	A0A1B0GTE1	492 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	IQCM	A0A1B0GVH7	501 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	EFCAB9	A8MZ26	197 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CENPBD1	B2RD01	187 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LYNX1	G3V0Z9	82 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NDUFAB1	O14561	156 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	FFAR1	O14842	300 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	STAMBP	O95630	424 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	IGFBP1	P08833	259 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TSPAN19	P0C672	248 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LYNX1	P0DP58	116 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CCNO	P22674	350 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	GZMK	P49863	264 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CTXN1	P60606	82 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PSME3	P61289	254 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HSF2	Q03933	536 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	SGCA	Q16586	387 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	FXN	Q16595	210 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TBC1D28	Q2M2D7	210 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ALKBH6	Q3KRA9	238 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	C8orf82	Q6P1X6	216 aa	Predicted RBP	11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	TBPL2	Q6SJ96	375 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HACD2	Q6Y1H2	254 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	OAF	Q86UD1	273 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CYP4Z1	Q86W10	505 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CLDN22	Q8N7P3	220 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	OR13C2	Q8NGS9	318 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	UBASH3B	Q8TF42	649 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CHODL	Q9H9P2	273 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	CCNB1IP1	Q9NPC3	277 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MYEF2	Q9P2K5	600 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	EGFL7	Q9UHF1	273 aa		11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	ZNF346	Q9UL40	294 aa	Known RBP	11.72	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	IGKV1D-43	A0A0B4J1Z2	117 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LRP5L	A4QPB2	252 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	HTR3E	A5X5Y0	456 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PTH	P01270	115 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	LCK	P06239	509 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NAT2	P11245	290 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	APEX1	P27695	318 aa	Known RBP	11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	GPR4	P46093	362 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	EVX1	P49640	407 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	RPL27	P61353	136 aa	Known RBP	11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	MRPS34	P82930	218 aa	Known RBP	11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PRKCD	Q05655	676 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NKPD1	Q17RQ9	610 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	NRN1L	Q496H8	165 aa		11.71	□□□□□ -0.53
CDK5RAP3-233	ENST00000584186	PABPC1L2A	Q5JQF8	200 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms