RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PSG5Q15238 335 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TTLL9Q3SXZ7 439 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ANKRD26P1Q6NSI1 321 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF530Q6P9A1 599 aaPredicted RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF836Q6ZNA1 936 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 BZW1Q7L1Q6 419 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ABHD13Q7L211 337 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 THOC6Q86W42 341 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 IQCKQ8N0W5 287 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ARIH2OSQ8N7S6 290 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 OR10R2Q8NGX6 335 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 FAM81AQ8TBF8 368 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ACTRT1Q8TDG2 376 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ACMSDQ8TDX5 336 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TSEN15Q8WW01 171 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 C20orf24Q9BUV8 137 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 GABARAPL3Q9BY60 117 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 PARP12Q9H0J9 701 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 DNTTIP1Q9H147 329 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 EXO5Q9H790 373 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 TMEM185BQ9H7F4 350 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 GPATCH2LQ9NWQ4 482 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 DEC1Q9P2X7 70 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 UXTQ9UBK9 157 aaPredicted RBP2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 PITPNC1Q9UKF7 332 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 ING4Q9UNL4 249 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 NSD2O96028 1365 aa2.45□□□□□ -2.02
SMCHD1-209ENST00000583441 CENPJQ9HC77 1338 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 PHF3Q92576 2039 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 MEGF6O75095 1541 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 IGLV11-55A0A075B6I3 123 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 GLYATL1P3A0A0U1RQE8 302 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 NDUFAB1O14561 156 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 LSM1O15116 133 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 CDH16O75309 829 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 SUPT3HO75486 399 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 PCCAP05165 728 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 GALP22466 123 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 UBE2AP49459 152 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 LHX2P50458 406 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 HERVK_113P61574 105 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 RPS15P62841 145 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 TWF1Q12792 350 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 GUCA2BQ16661 112 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 TMEM183BQ1AE95 376 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 Q6ZSR3 168 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC16A14Q7RTX9 510 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 SCD5Q86SK9 330 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 OAFQ86UD1 273 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 TMEM183AQ8IXX5 376 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 FBXL13Q8NEE6 735 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 OR4A4PQ8NGN8 299 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 KIFAP3Q92845 792 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 RNF185Q96GF1 192 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 PKNOX2Q96KN3 472 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 MRPL37Q9BZE1 423 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 CWH43Q9H720 699 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 FGF20Q9NP95 211 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 CARMIL3Q8ND23 1372 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 NINLQ9Y2I6 1382 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 CHD4Q14839 1912 aa2.44□□□□□ -2.02
SMCHD1-209ENST00000583441 ASTN1O14525 1302 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 LYRM9A8MSI8 78 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ICOSLGO75144 302 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SS18L1O75177 396 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CLPXO76031 633 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 FGFR1OPO95684 399 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 RAB3DO95716 219 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CLIC3O95833 236 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 RETP07949 1114 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ANXA5P08758 320 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF30P17039 623 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CNR1P21554 472 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 AQP2P41181 271 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CXCL5P42830 114 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 RPS10P46783 165 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CX3CR1P49238 355 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ACTA2P62736 377 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ACTG2P63267 376 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ACTC1P68032 377 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ACTA1P68133 377 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 PAX5Q02548 391 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 MERTKQ12866 999 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SF3A2Q15428 464 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 PGGHGQ32M88 737 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 THEM4Q5T1C6 240 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CCNJQ5T5M9 372 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 C22orf42Q6IC83 251 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 TTC23LQ6PF05 361 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 LYPD2Q6UXB3 125 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 STRADAQ7RTN6 431 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SSX9Q7RTT3 188 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ASCL5Q7RTU5 278 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF433Q8N7K0 673 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 DUSP18Q8NEJ0 188 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 OR4S2Q8NH73 311 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC7A13Q8TCU3 470 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 DNAJC19Q96DA6 116 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 TAAR1Q96RJ0 339 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SDHCQ99643 169 aaPredicted RBP2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms