RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 RPP21Q9H633 154 aaKnown RBP2.54□□□□□ -2
SMCHD1-204ENST00000581226 FN3KRPQ9HA64 309 aa2.54□□□□□ -2
SMCHD1-204ENST00000581226 HYPKQ9NX55 129 aa2.54□□□□□ -2
SMCHD1-204ENST00000581226 SHPKQ9UHJ6 478 aa2.54□□□□□ -2
SMCHD1-204ENST00000581226 ZNF639Q9UID6 485 aa2.54□□□□□ -2
SMCHD1-204ENST00000581226 PEX16Q9Y5Y5 336 aa2.54□□□□□ -2
SMCHD1-204ENST00000581226 A0A1B0GVX0 72 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 EIF3GO75821 320 aaKnown RBP eCLIP2.53□□□□□ -2
SMCHD1-204ENST00000581226 C6orf47O95873 294 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 FABP3P05413 133 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 ETS2P15036 469 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 FOLR1P15328 257 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 NPY1RP25929 384 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 PBLDP30039 288 aaPredicted RBP2.53□□□□□ -2
SMCHD1-204ENST00000581226 SERPINB5P36952 375 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 CDKN1BP46527 198 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 PPIL2Q13356 520 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 POU2AF1Q16633 256 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 IGFL1Q6UW32 110 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 PSTKQ8IV42 348 aaKnown RBP2.53□□□□□ -2
SMCHD1-204ENST00000581226 ZNF615Q8N8J6 731 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 ZNF709Q8N972 641 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 OR1L6Q8NGR2 347 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 ZBTB18Q99592 522 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 CHAC1Q9BUX1 264 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 MRPL37Q9BZE1 423 aaKnown RBP2.53□□□□□ -2
SMCHD1-204ENST00000581226 RPF2Q9H7B2 306 aaKnown RBP2.53□□□□□ -2
SMCHD1-204ENST00000581226 LRRC40Q9H9A6 602 aa2.53□□□□□ -2
SMCHD1-204ENST00000581226 MYO10Q9HD67 2058 aa2.53□□□□□ -2.01
SMCHD1-204ENST00000581226 TRAV39A0A0B4J263 110 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 OR52A4PA6NMU1 304 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 DYNC1I1O14576 645 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 GOSR2O14653 212 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 PSTPIP1O43586 416 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 SOX15O60248 233 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 GABARAPO95166 117 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 CALM1P0DP23 149 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 CALM2P0DP24 149 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 CALM3P0DP25 149 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 ATP1B2P14415 290 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 MUC1P15941 1255 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 PSMC3P17980 439 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 RFX3P48380 749 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 ERCC8Q13216 396 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 GK3PQ14409 553 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 GINS1Q14691 196 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 RABL6Q3YEC7 729 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 FBXW9Q5XUX1 488 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 BIVMQ86UB2 503 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 OR4F6Q8NGB9 312 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 OR13C2Q8NGS9 318 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 OR4S2Q8NH73 311 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 PDXPQ96GD0 296 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 LINC00477Q96M19 166 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 P2RX4Q99571 388 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 ZDHHC4Q9NPG8 344 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 SIRT7Q9NRC8 400 aa2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 MRPS18BQ9Y676 258 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-204ENST00000581226 SYNJ2BP-COX16A0A087WUM0 186 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 VAMP5O95183 116 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 SNX4O95219 450 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC25A14O95258 325 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 GDI1P31150 447 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 HRH1P35367 487 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 CDKN2BP42772 138 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 NAMPTP43490 491 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 CDH4P55283 916 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 BST1Q10588 318 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 C6orf226Q5I0X4 101 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 PHYHD1Q5SRE7 291 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC25A48Q6ZT89 311 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 UBALD2Q8IYN6 164 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 HSD17B11Q8NBQ5 300 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 SDR9C7Q8NEX9 313 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF578Q96N58 590 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 TCHPQ9BT92 498 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 ROPN1BQ9BZX4 212 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 METTL7AQ9H8H3 244 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 NT5MQ9NPB1 228 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 ISYNA1Q9NPH2 558 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF355PQ9NSJ1 428 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC7A8Q9UHI5 535 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 HPCAL4Q9UM19 191 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 PSG8Q9UQ74 426 aa2.51□□□□□ -2.01
SMCHD1-204ENST00000581226 IGLV2-18A0A075B6J9 118 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 IGHV3-74A0A0B4J1X5 117 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 COLCA2A8K830 154 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 ZNF705GA8MUZ8 300 aaPredicted RBP2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 PALMO75781 387 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 RBBP9O75884 186 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 UTS2O95399 124 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 TMEM50AO95807 157 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 ADRA2AP08913 450 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 GNAO1P09471 354 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 CT62P0C5K7 136 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 CSNK1A1P48729 337 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 NUTF2P61970 127 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 TCP10Q12799 353 aa2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 DDX39BQ13838 428 aaKnown RBP2.5□□□□□ -2.01
SMCHD1-204ENST00000581226 SLC25A34Q6PIV7 304 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms