RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF175Q9Y473 711 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 FREM1Q5H8C1 2179 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 SNTNA6NMZ2 147 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 AHRRA9YTQ3 701 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 ERVH48-1M5A8F1 160 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 SBK2P0C263 348 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 PCMT1P22061 227 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 ATP6V1E1P36543 226 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 CSNK1A1P48729 337 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 RAB40BQ12829 278 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 PRSS48Q7RTY5 328 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 LHFPL3Q86UP9 236 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 ZNF649Q9BS31 505 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 TTTY10Q9BZA0 68 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 FGF20Q9NP95 211 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-207ENST00000580002 HAO2Q9NYQ3 351 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 SCOCQ9UIL1 159 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 FAM215AQ9Y5M1 114 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 RP1L1Q8IWN7 2480 aaPredicted RBP22.21■■□□□ 1.15
SHMT1-207ENST00000580002 CACNA1BQ00975 2339 aa22.21■■□□□ 1.15
SHMT1-207ENST00000580002 SMG1Q96Q15 3661 aaKnown RBP22.21■■□□□ 1.15
SHMT1-207ENST00000580002 ZGRF1Q86YA3 2104 aa22.2■■□□□ 1.15
SHMT1-207ENST00000580002 YES1P07947 543 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 IRF3Q14653 427 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 KLHL22Q53GT1 634 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 SLC35D3Q5M8T2 416 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 XAF1Q6GPH4 301 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 GFRALQ6UXV0 394 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 MCEMP1Q8IX19 187 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 MRPS26Q9BYN8 205 aaKnown RBP22.2■■□□□ 1.14
SHMT1-207ENST00000580002 MAGEB4O15481 346 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-207ENST00000580002 RNPS1Q15287 305 aaKnown RBP22.2■■□□□ 1.14
SHMT1-207ENST00000580002 NEDD8Q15843 81 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 THEM4Q5T1C6 240 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 SSX6Q7RTT6 188 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 ERI1Q8IV48 349 aaKnown RBP22.2■■□□□ 1.14
SHMT1-207ENST00000580002 TIGD4Q8IY51 512 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 FAM57AQ8TBR7 257 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 TMIGD2Q96BF3 282 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 COPS3Q9UNS2 423 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 MOKQ9UQ07 419 aa22.2■■□□□ 1.14
SHMT1-207ENST00000580002 ZNF724A8MTY0 619 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 TOXO94900 526 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 RAB36O95755 333 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 CLPTM1O96005 669 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 PTHP01270 115 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 ABOP16442 354 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 CRABP1P29762 137 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 FOXF2Q12947 444 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 BLMHQ13867 455 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 GGTLC2Q14390 218 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 TSPO2Q5TGU0 170 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 TMEM45BQ96B21 275 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 INTS12Q96CB8 462 aaKnown RBP22.19■■□□□ 1.14
SHMT1-207ENST00000580002 RACGAP1Q9H0H5 632 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 C12orf49Q9H741 205 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 DIMT1Q9UNQ2 313 aaKnown RBP22.19■■□□□ 1.14
SHMT1-207ENST00000580002 RCE1Q9Y256 329 aa22.19■■□□□ 1.14
SHMT1-207ENST00000580002 C12orf71A8MTZ7 269 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 GPR171O14626 319 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 MRPL33O75394 65 aaKnown RBP22.18■■□□□ 1.14
SHMT1-207ENST00000580002 KHDRBS3O75525 346 aaKnown RBP22.18■■□□□ 1.14
SHMT1-207ENST00000580002 HLA-DQA2P01906 255 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 LCKP06239 509 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 LIMS3P0CW19 117 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 LIMS4P0CW20 117 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 AGTR1P30556 359 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 FOXG1P55316 489 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-207ENST00000580002 OR10H4Q8NGA5 316 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 ALKBH3Q96Q83 286 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-207ENST00000580002 CCNB1IP1Q9NPC3 277 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 KLHDC2Q9Y2U9 406 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 UGT2A1Q9Y4X1 527 aa22.18■■□□□ 1.14
SHMT1-207ENST00000580002 SLC43A1O75387 559 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 SIRPAP78324 504 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 NSUN5P2Q63ZY6 315 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 HDDC2Q7Z4H3 204 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 DOLPP1Q86YN1 238 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 CNN2Q99439 309 aaKnown RBP22.17■■□□□ 1.14
SHMT1-207ENST00000580002 SLC7A10Q9NS82 523 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 EMC3Q9P0I2 261 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 SNX5Q9Y5X3 404 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 A0A1W2PPL8 197 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 PRR32B1ATL7 298 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 AHCYL1O43865 530 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 SEC14L2O76054 403 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 INMTO95050 263 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 IGHA1P01876 353 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 GAAP10253 952 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 ZNF85Q03923 595 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 NFATC3Q12968 1075 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 TMED1Q13445 227 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 OR2G6Q5TZ20 316 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 LCN1P1Q5VSP4 162 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 WNT2BQ93097 391 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 OR5M11Q96RB7 305 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 CDCA4Q9BXL8 241 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 SEC61A2Q9H9S3 476 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 ACOT13Q9NPJ3 140 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 PRSS50Q9UI38 385 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms