RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 LRRC18Q8N456 261 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 ARIH2OSQ8N7S6 290 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 SLC30A7Q8NEW0 376 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 UBASH3BQ8TF42 649 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 LIPHQ8WWY8 451 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 MSI2Q96DH6 328 aaKnown RBP14.05□□□□□ -0.16
VPS29-207ENST00000549970 MRPL13Q9BYD1 178 aaKnown RBP14.05□□□□□ -0.16
VPS29-207ENST00000549970 SHARPINQ9H0F6 387 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 OR51B6Q9H340 312 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 TMEM160Q9NX00 188 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 MYEF2Q9P2K5 600 aaKnown RBP14.05□□□□□ -0.16
VPS29-207ENST00000549970 KCNS2Q9ULS6 477 aa14.05□□□□□ -0.16
VPS29-207ENST00000549970 A0A1W2PPW3 197 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 CENPBD1B2RD01 187 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 LYNX1G3V0Z9 82 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 J3KTA2 159 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 SLC2A10O95528 541 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 TSPAN19P0C672 248 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 LYNX1P0DP58 116 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 COX4I1P13073 169 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 IFI30P13284 250 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 FUT4P22083 530 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 IGFBP5P24593 272 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 GIFP27352 417 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 MDH1P40925 334 aaKnown RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 SLC7A2P52569 658 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 SEC24CP53992 1094 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 LIPEQ05469 1076 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 TOP3AQ13472 1001 aaPredicted RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 ALG10Q5BKT4 473 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 ARMC4Q5T2S8 1044 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 MEX3DQ86XN8 651 aaKnown RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 PAQR4Q8N4S7 273 aaPredicted RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 RBM15BQ8NDT2 890 aaKnown RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 HDAC2Q92769 488 aaKnown RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 SEPHS2Q99611 448 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 CDH20Q9HBT6 801 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 STX18Q9P2W9 335 aaKnown RBP14.04□□□□□ -0.16
VPS29-207ENST00000549970 RHCGQ9UBD6 479 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 DUSP13Q9UII6 198 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 AP3M1Q9Y2T2 418 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 SNX13Q9Y5W8 968 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 COL6A5A8TX70 2615 aa14.04□□□□□ -0.16
VPS29-207ENST00000549970 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.03□□□□□ -0.162e-11■■■■■ 31.7
VPS29-207ENST00000549970 CXCR6O00574 342 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 GSTA4O15217 222 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 CCDC22O60826 627 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 ZNF682O95780 498 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 IFNW1P05000 195 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 SAGP10523 405 aaPredicted RBP14.03□□□□□ -0.16
VPS29-207ENST00000549970 CDAP32320 146 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 FMODQ06828 376 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 CD47Q08722 323 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 TBC1D28Q2M2D7 210 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 ALKBH6Q3KRA9 238 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 NRN1LQ496H8 165 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 C10orf128Q5T292 105 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 RGS7BPQ6MZT1 257 aaPredicted RBP14.03□□□□□ -0.16
VPS29-207ENST00000549970 IL17RELQ6ZVW7 336 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 DPPA2Q7Z7J5 298 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 NRMQ8IXM6 262 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 NSMAFQ92636 917 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 BPIFA2Q96DR5 249 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 SNX18Q96RF0 628 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 SOX7Q9BT81 388 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 FNDC11Q9BVV2 318 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 TXNIPQ9H3M7 391 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 MS4A5Q9H3V2 200 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 MED4Q9NPJ6 270 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 LPAR3Q9UBY5 353 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 HIF3AQ9Y2N7 669 aa14.03□□□□□ -0.16
VPS29-207ENST00000549970 IGKV1D-43A0A0B4J1Z2 117 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 IQCMA0A1B0GVH7 501 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 NME4O00746 187 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 LILRA1O75019 489 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 TGFAP01135 160 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 NAT2P11245 290 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 MAKP20794 623 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 IL2RGP31785 369 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 ZNF133P52736 654 aaPredicted RBP14.02□□□□□ -0.17
VPS29-207ENST00000549970 CHN2P52757 468 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 HSF2Q03933 536 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 PLP2Q04941 152 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 RIN1Q13671 783 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 TRIP10Q15642 601 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 IGFN1Q86VF2 1251 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 TREML1Q86YW5 311 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 OFCC1Q8IZS5 231 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 ICA1LQ8NDH6 482 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 GEMIN6Q8WXD5 167 aaKnown RBP14.02□□□□□ -0.17
VPS29-207ENST00000549970 C1orf198Q9H425 327 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 MAN2C1Q9NTJ4 1040 aa14.02□□□□□ -0.17
VPS29-207ENST00000549970 TRAV27A0A087WT01 109 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 SLC22A23A1A5C7 686 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 NPIPB13A6NJU9 1138 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 RNF212BA8MTL3 300 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 NPIPB4C9JG80 1138 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 CLPTM1O96005 669 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 PTHP01270 115 aa14.01□□□□□ -0.17
VPS29-207ENST00000549970 HPXP02790 462 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms