RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 TMEM106BQ9NUM4 274 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ATAD3AQ9NVI7 634 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 NINJ2Q9NZG7 142 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 RYR1P21817 5038 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 A0A096LPI6 279 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 AIM2O14862 343 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 AGR2O95994 175 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 GSTA1P08263 222 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 RPS2P15880 293 aaKnown RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 RPS4Y1P22090 263 aaKnown RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 MPV17P39210 176 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 AQP5P55064 265 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 BPIFB3P59826 476 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 FGF12P61328 243 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 CAV1Q03135 178 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 PTGR1Q14914 329 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 LARS2Q15031 903 aaKnown RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 GSTA3Q16772 222 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 TBC1D28Q2M2D7 210 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 MRPL2Q5T653 305 aaKnown RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 C6orf89Q6UWU4 347 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 GDPGP1Q6ZNW5 385 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 RNF165Q6ZSG1 346 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 C6orf120Q7Z4R8 191 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 THAP5Q7Z6K1 395 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 LDLRAD3Q86YD5 345 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 MUC20Q8N307 709 aaPredicted RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 CADM2Q8N3J6 435 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 ZNF283Q8N7M2 679 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 MFSD8Q8NHS3 518 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 PNPT1Q8TCS8 783 aaKnown RBP6.84□□□□□ -1.31
CD44-232ENST00000531118 RAB40AQ8WXH6 277 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 SLC25A36Q96CQ1 311 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 SIGLEC11Q96RL6 698 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 C1orf198Q9H425 327 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 TUBB1Q9H4B7 451 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 NANOGQ9H9S0 305 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 GIMAP2Q9UG22 337 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 FIS1Q9Y3D6 152 aa6.84□□□□□ -1.31
CD44-232ENST00000531118 PLSCR5A0PG75 271 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 MGRN1O60291 552 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 TSPAN9O75954 239 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 ATF4P18848 351 aaPredicted RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 MDH2P40926 338 aaKnown RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 RPS5P46782 204 aaKnown RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 UCP2P55851 309 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 PCBP3P57721 371 aaKnown RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 GNB2P62879 340 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 CD69Q07108 199 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 GPAT3Q53EU6 434 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 SPATA46Q5T0L3 261 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 ATG16L1Q676U5 607 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 WBP2NLQ6ICG8 309 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 LRRC28Q86X40 367 aaPredicted RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 SNX32Q86XE0 403 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 KLBQ86Z14 1044 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 UEVLDQ8IX04 471 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 SKA3Q8IX90 412 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 ZNF440Q8IYI8 595 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 CLECL1Q8IZS7 167 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 KRTCAP2Q8N6L1 136 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 FITM2Q8N6M3 262 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 NATD1Q8N6N6 113 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 C11orf44Q8N8P7 122 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 OR1J1Q8NGS3 322 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 XAGE5Q8WWM1 108 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 LRTOMTQ8WZ04 291 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 LRR1Q96L50 414 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 NUDT16L1Q9BRJ7 211 aaKnown RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 DUSP26Q9BV47 211 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 EMC6Q9BV81 110 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 FUT8Q9BYC5 575 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 SLC38A1Q9H2H9 487 aa6.83□□□□□ -1.32
CD44-232ENST00000531118 CGGBP1Q9UFW8 167 aaPredicted RBP6.83□□□□□ -1.32
CD44-232ENST00000531118 ZNF816-ZNF321PA0A0X1KG74 233 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 TMEM114B3SHH9 223 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 POC1B-GALNT4F8VUJ3 575 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 C3orf84H3BNL1 204 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 AZIN1O14977 448 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 HPRP00739 348 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 SFTPBP07988 381 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 WNT2P09544 360 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 LINC00032P0C843 101 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 GKN3PP0CG01 181 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 HLA-DOBP13765 273 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 UQCRC2P22695 453 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 GRPRP30550 384 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 CFHR2P36980 270 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 PAFAH1B1P43034 410 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 IER3P46695 156 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 NAA20P61599 178 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 GNG11P61952 73 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 TNFAIP6P98066 277 aaPredicted RBP6.82□□□□□ -1.32
CD44-232ENST00000531118 EGR4Q05215 589 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 C2orf54Q08AI8 447 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 TTMPQ5BVD1 217 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 ZMAT1Q5H9K5 638 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 ZNF836Q6ZNA1 936 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 RFPL4BQ6ZWI9 263 aa6.82□□□□□ -1.32
CD44-232ENST00000531118 LCA5Q86VQ0 697 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms