RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 THADAQ6YHU6 1953 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 KRT87PA6NCN2 255 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ZNF98A6NK75 572 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 SPECC1L-ADORA2AF8WAN1 911 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 J3QKU1 62 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 UBXN8O00124 270 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 BPY2O14599 106 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 PRKAB2O43741 272 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TOM1O60784 492 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 DIRAS1O95057 198 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 IGHV2-5P01817 119 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ZNF735P0CB33 412 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 CALCBP10092 127 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 GAP43P17677 238 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TCN1P20061 433 aaPredicted RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 HRH1P35367 487 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 RORCP51449 518 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 RPS11P62280 158 aaKnown RBP eCLIP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 FLI1Q01543 452 aaPredicted RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 NCBP1Q09161 790 aaKnown RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ZNF235Q14590 738 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 GANABQ14697 944 aaKnown RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 RBMY1FQ15415 496 aaKnown RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ZSCAN26Q16670 478 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 SPECC1LQ69YQ0 1117 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TRIM40Q6P9F5 258 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ARL9Q6T311 187 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 PLET1Q6UQ28 207 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TMEM136Q6ZRR5 245 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 ZNF557Q8N988 423 aaPredicted RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 FADS6Q8N9I5 356 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 HSD17B11Q8NBQ5 300 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 OR13G1Q8NGZ3 307 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 PYROXD1Q8WU10 500 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 SHC3Q92529 594 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 CREB3L1Q96BA8 519 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TGM7Q96PF1 710 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 SLC25A2Q9BXI2 301 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 LRRN3Q9H3W5 708 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 SAV1Q9H4B6 383 aaPredicted RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 RPF2Q9H7B2 306 aaKnown RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 TMCO1Q9UM00 188 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 OR10H1Q9Y4A9 318 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 PNPLA6Q8IY17 1366 aa0.69□□□□□ -2.3
PDGFC-208ENST00000512711 RPAP1Q9BWH6 1393 aaPredicted RBP0.69□□□□□ -2.3
PDGFC-208ENST00000512711 CCDC182A6NF36 153 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CCER2I3L3R5 266 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 POLR1CO15160 346 aaPredicted RBP0.68□□□□□ -2.3
PDGFC-208ENST00000512711 RAMP3O60896 148 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 DIRAS3O95661 229 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 AK1P00568 194 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 IGLV6-57P01721 117 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 HLA-DQB1P01920 261 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CAPN1P07384 714 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 UBTFL6P0CB48 400 aaPredicted RBP0.68□□□□□ -2.3
PDGFC-208ENST00000512711 OPRD1P41143 372 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 AQP2P41181 271 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 ZNF138P52744 262 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CRISP1P54107 249 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 TNFRSF9Q07011 255 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 DPYSL2Q16555 572 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 TEX43Q6ZNM6 134 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 Q6ZS52 159 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 TMEM179Q6ZVK1 233 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CCDC80Q76M96 950 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 HDDC2Q7Z4H3 204 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 ADM2Q7Z4H4 148 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CALHM1Q8IU99 346 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CEP112Q8N8E3 955 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 OR5M1Q8NGP8 315 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 LILRB4Q8NHJ6 448 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CTNNBL1Q8WYA6 563 aaPredicted RBP0.68□□□□□ -2.3
PDGFC-208ENST00000512711 SLC25A46Q96AG3 418 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 CLCC1Q96S66 551 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 TCHPQ9BT92 498 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 KRT23Q9C075 422 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 MRPL47Q9HD33 250 aaKnown RBP0.68□□□□□ -2.3
PDGFC-208ENST00000512711 DDX19AQ9NUU7 478 aaKnown RBP0.68□□□□□ -2.3
PDGFC-208ENST00000512711 TMOD2Q9NZR1 351 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 SIGLEC7Q9Y286 467 aa0.68□□□□□ -2.3
PDGFC-208ENST00000512711 H0YJW9 148 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 SOCS1O15524 211 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 CLDN3O15551 220 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 MGRN1O60291 552 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 TBX19O60806 448 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 CT62P0C5K7 136 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 ARF4P18085 180 aaPredicted RBP0.67□□□□□ -2.3
PDGFC-208ENST00000512711 CCR1P32246 355 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 MAS1LP35410 378 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 RPL13AP40429 203 aaKnown RBP0.67□□□□□ -2.3
PDGFC-208ENST00000512711 RGS4P49798 205 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 IFT88Q13099 833 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 SCGB2A2Q13296 93 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 PRPSAP1Q14558 356 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 GUSBP11Q6P575 273 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 SMARCD3Q6STE5 483 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 SPINT4Q6UDR6 99 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 FBXW12Q6X9E4 464 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 SLC16A13Q7RTY0 426 aa0.67□□□□□ -2.3
PDGFC-208ENST00000512711 CCDC50Q8IVM0 306 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms