RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 QDPRP09417 244 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 FAM157BP0CG42 384 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 LYNX1P0DP58 116 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 NAT2P11245 290 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 HOXB9P17482 250 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 GATA3P23771 443 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 LIPAP38571 399 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 NFYCQ13952 458 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 MAD2L1BPQ15013 274 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 AGBL2Q5U5Z8 902 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 ARL9Q6T311 187 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 RETREG3Q86VR2 466 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 SKA3Q8IX90 412 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 ALDH16A1Q8IZ83 802 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 FNDC8Q8TC99 324 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 ADAMTS16Q8TE57 1224 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 TLCD1Q96CP7 247 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 ELMOD3Q96FG2 381 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 ARHGDIGQ99819 225 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 SIKE1Q9BRV8 207 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 RBM4Q9BWF3 364 aaKnown RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 SUCNR1Q9BXA5 334 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 POLR2J2Q9GZM3 115 aaKnown RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 POLR2J3Q9H1A7 115 aaKnown RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 SAP30LQ9HAJ7 183 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 LPAR2Q9HBW0 351 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 CYSLTR2Q9NS75 346 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 TREM2Q9NZC2 230 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 CGGBP1Q9UFW8 167 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-213ENST00000493475 BAG5Q9UL15 447 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 FZR1Q9UM11 496 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 PCDHB10Q9UN67 800 aa9.93□□□□□ -0.82
COL6A3-213ENST00000493475 YLPM1P49750 1951 aaKnown RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SVEP1Q4LDE5 3571 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 IGHV1-69-2A0A0G2JMI3 117 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 HTR3EA5X5Y0 456 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 BLOC1S5-TXNDC5H3BN57 136 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 M0QX08 132 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 M0R3H8 397 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 KPNA4O00629 521 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF500O60304 480 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 RBM34P42696 430 aaKnown RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SEC24CP53992 1094 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 UCP2P55851 309 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SRSF2Q01130 221 aaKnown RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF718Q3SXZ3 478 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 PAGE3Q5JUK9 113 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 RBMS3Q6XE24 437 aaKnown RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 USP43Q70EL4 1123 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 FUNDC1Q8IVP5 155 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 MSRB3Q8IXL7 192 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 BPIFB2Q8N4F0 458 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 C3orf56Q8N813 242 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 OR4K5Q8NGD3 323 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 VANGL1Q8TAA9 524 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 TSPEARQ8WU66 669 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 GCDHQ92947 438 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SH3GL3Q99963 347 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 CPPED1Q9BRF8 314 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF665Q9H7R5 613 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SLAMF8Q9P0V8 285 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 SLC7A7Q9UM01 511 aa9.92□□□□□ -0.82
COL6A3-213ENST00000493475 IGLV3-9A0A075B6K5 115 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 TRBV5-3A0A0A0MS03 114 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 LRRN3E7EW58 273 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CDC14BO60729 498 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 MPZL1O95297 269 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 PGA4P0DJD7 388 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 PGA3P0DJD8 388 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF250P15622 560 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 EPHA1P21709 976 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CCNOP22674 350 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 COL8A2P25067 703 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 FPR2P25090 351 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 PCGF2P35227 344 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CRYBB2P43320 205 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF81P51508 661 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ARHGDIAP52565 204 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 PCBP3P57721 371 aaKnown RBP9.91□□□□□ -0.82
COL6A3-213ENST00000493475 TAS2R41P59536 307 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 PCBD1P61457 104 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CCL8P80075 99 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 RUNX1T1Q06455 604 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CYLC2Q14093 348 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-213ENST00000493475 MELKQ14680 651 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 RUNDC3AQ59EK9 446 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 DCAF12L2Q5VW00 463 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 LINC00114Q6XXX2 140 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ZER1Q7Z7L7 766 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 NOXO1Q8NFA2 376 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 OR6T1Q8NGN1 323 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 NANPQ8TBE9 248 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ST7LQ8TDW4 575 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 STON2Q8WXE9 905 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 ZNF75AQ96N20 296 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 DIRC2Q96SL1 478 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 CGREF1Q99674 301 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 NDEL1Q9GZM8 345 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 RACGAP1Q9H0H5 632 aa9.91□□□□□ -0.82
COL6A3-213ENST00000493475 OR51B6Q9H340 312 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms