RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 KCTD20Q7Z5Y7 419 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 PCNPQ8WW12 178 aaKnown RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 C8orf44Q96CB5 159 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 MRPL48Q96GC5 212 aaKnown RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 CHRNA10Q9GZZ6 450 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 FBXL3Q9UKT7 428 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 COA3Q9Y2R0 106 aaPredicted RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 TRBV5-5A0A0J9YX44 114 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 GPR171O14626 319 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 PDCD5O14737 125 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 NPIPB7O75200 414 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 KDM4BO94953 1096 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 SLC6A8P48029 635 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 EPHA4P54764 986 aa17.19■□□□□ 0.34
VIM-203ENST00000469543 RPL27P61353 136 aaKnown RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 TSEN15Q8WW01 171 aaKnown RBP17.19■□□□□ 0.34
VIM-203ENST00000469543 IGKV1D-43A0A0B4J1Z2 117 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 GSTZ1O43708 216 aaPredicted RBP17.18■□□□□ 0.34
VIM-203ENST00000469543 ART1P52961 327 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 GUCA2AQ02747 115 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 EMC4Q5J8M3 183 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 CORO6Q6QEF8 472 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 LINC00346Q8IVM7 164 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 APCDD1LQ8NCL9 501 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 OR4D10Q8NGI6 311 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 FCAMRQ8WWV6 532 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 MSANTD3Q96H12 275 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 SEC22CQ9BRL7 303 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 MED29Q9NX70 200 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 H3BML4 177 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 OR6A2O95222 327 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 IGF2P01344 180 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 AFF3P51826 1226 aaKnown RBP17.18■□□□□ 0.34
VIM-203ENST00000469543 PNLIPRP2P54317 469 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 SGCBQ16585 318 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 NUP210LQ5VU65 1888 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 BTN2A1Q7KYR7 527 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 ZNF441Q8N8Z8 693 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 ZNF431Q8TF32 576 aaPredicted RBP17.18■□□□□ 0.34
VIM-203ENST00000469543 CCNL2Q96S94 520 aaPredicted RBP17.18■□□□□ 0.34
VIM-203ENST00000469543 GON7Q9BXV9 100 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 CHIAQ9BZP6 476 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 TAS2R10Q9NYW0 307 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 PCDHGA5Q9Y5G8 931 aa17.18■□□□□ 0.34
VIM-203ENST00000469543 PLPP3O14495 311 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 ARPC1BO15143 372 aaKnown RBP17.17■□□□□ 0.34
VIM-203ENST00000469543 ANXA7P20073 488 aaKnown RBP17.17■□□□□ 0.34
VIM-203ENST00000469543 RAD52P43351 418 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 SHBQ15464 509 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 GPR139Q6DWJ6 353 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 PLCZ1Q86YW0 608 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 HAVCR1Q96D42 359 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 C4orf45Q96LM5 186 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 HYLS1Q96M11 299 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 DCBLD2Q96PD2 775 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 EMC6Q9BV81 110 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 KLHL9Q9P2J3 617 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 PHF3Q92576 2039 aaKnown RBP17.17■□□□□ 0.34
VIM-203ENST00000469543 SLC22A23A1A5C7 686 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 GABARAPH6UMI1 98 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 KRT33AO76009 404 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 POLR2HP52434 150 aaKnown RBP17.17■□□□□ 0.34
VIM-203ENST00000469543 TAS2R20P59543 309 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 LINC00303Q3SY05 128 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 SLC22A10Q63ZE4 541 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 OR5M1Q8NGP8 315 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 ZNF519Q8TB69 540 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 GPR148Q8TDV2 347 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 PHYHIPQ92561 330 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 MIB2Q96AX9 1013 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 OR6C1Q96RD1 312 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 COMMD4Q9H0A8 199 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 SLITRK2Q9H156 845 aa17.17■□□□□ 0.34
VIM-203ENST00000469543 LOC101059948A0A1B0GTJ6 334 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 A8MVM7 634 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 CTDSPLO15194 276 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 LMX1BO60663 402 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 POU3F3P20264 500 aaPredicted RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 DCAF7P61962 342 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 SLC17A1Q14916 467 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 OR7A5Q15622 319 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 LCN10Q6JVE6 187 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 SLC25A25Q6KCM7 469 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 ABHD6Q9BV23 337 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 TMEM185BQ9H7F4 350 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 FRYQ5TBA9 3013 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 IGLV1-36A0A0B4J1U3 117 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 TO15178 435 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 EIF4E2O60573 245 aaKnown RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 ZNF254O75437 659 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 DXOO77932 396 aaKnown RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 PSMB1P20618 241 aaKnown RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 ARRB1P49407 418 aaPredicted RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 EGR3Q06889 387 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 SNTA1Q13424 505 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 GUSBP11Q6P575 273 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 PIAS4Q8N2W9 510 aaPredicted RBP17.16■□□□□ 0.34
VIM-203ENST00000469543 OR56B4Q8NH76 319 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 MCHR2Q969V1 340 aa17.16■□□□□ 0.34
VIM-203ENST00000469543 OR8B4Q96RC9 309 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms