RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 UPK3AO75631 287 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 RGS9O75916 674 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 HLA-DQA2P01906 255 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 PGA4P0DJD7 388 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 PGA3P0DJD8 388 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GAAP10253 952 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CD53P19397 219 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GDF1P27539 372 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CRABP1P29762 137 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CD97P48960 835 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CENPAP49450 140 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GBX2P52951 348 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GFRA1P56159 465 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CLDN15P56746 228 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CAMK2DQ13557 499 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 FAM27D1Q5T7N8 215 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 LRRC69Q6ZNQ3 347 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 MDS2Q8NDY4 140 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SLC26A10Q8NG04 563 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SMIM19Q96E16 107 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 MED18Q9BUE0 208 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 MFRPQ9BY79 579 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF703Q9H7S9 590 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 PLGRKTQ9HBL7 147 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 LAMP5Q9UJQ1 280 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 BOKQ9UMX3 212 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SEC14L5O43304 696 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 TRAPPC6AO75865 159 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 WNT11O96014 354 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 CELA3AP09093 270 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 STARP49675 285 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GDI2P50395 445 aaKnown RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SUCLG1P53597 346 aaKnown RBP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SOX8P57073 446 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 RPS11P62280 158 aaKnown RBP eCLIP12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GLO1Q04760 184 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 ABHD4Q8TB40 342 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 MNTQ99583 582 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 KCNS3Q9BQ31 491 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 PDCD1LG2Q9BQ51 273 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 OCEL1Q9H607 264 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 POLHQ9Y253 713 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 GSTK1Q9Y2Q3 226 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 PHF3Q92576 2039 aaKnown RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 CLDN25C9JDP6 229 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF43P17038 809 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 ENPP1P22413 925 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 SOX6P35712 828 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 RORCP51449 518 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 BLVRAP53004 296 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 CAV3P56539 151 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 HNRNPA0Q13151 305 aaKnown RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 RTP5Q14D33 572 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 CCDC58Q4VC31 144 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 LIPNQ5VXI9 398 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 RPL22L1Q6P5R6 122 aaKnown RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 OR6X1Q8NH79 312 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 NEIL3Q8TAT5 605 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 THEM6Q8WUY1 208 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 KCNE4Q8WWG9 221 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 SLC25A44Q96H78 314 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 ADGRG7Q96K78 797 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 SFXN2Q96NB2 322 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF552Q9H707 407 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 SLCO1C1Q9NYB5 712 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 PLEKHB1Q9UF11 243 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-202ENST00000372405 RASD1Q9Y272 281 aa12.28□□□□□ -0.44
PTPRF-202ENST00000372405 A0A075B6Q4 140 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 TRBV2A0A0J9YWF9 115 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 OR5H15A6NDH6 313 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 CTDSP2O14595 271 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 RPP14O95059 124 aaKnown RBP12.27□□□□□ -0.44
PTPRF-202ENST00000372405 SPARCP09486 303 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 EDNRAP25101 427 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 AGFG1P52594 562 aaKnown RBP12.27□□□□□ -0.44
PTPRF-202ENST00000372405 CSNK2A1P68400 391 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-202ENST00000372405 ADAM8P78325 824 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 EGR3Q06889 387 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 CLN3Q13286 438 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 MFAP5Q13361 173 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 HIST3H3Q16695 136 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 AGAP7PQ5VUJ5 663 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 NR2C2APQ86WQ0 139 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 NOXO1Q8NFA2 376 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 BORCS5Q969J3 196 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 MRPL48Q96GC5 212 aaKnown RBP12.27□□□□□ -0.44
PTPRF-202ENST00000372405 MAP6Q96JE9 813 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 AGAP4Q96P64 663 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 TTTY12Q9BZ98 90 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 TMEM14AQ9Y6G1 99 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 FRYQ5TBA9 3013 aa12.27□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF407Q9C0G0 2248 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 LAMA5O15230 3695 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 A0A1B0GTH9 108 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 EIF1AYO14602 144 aaKnown RBP12.27□□□□□ -0.45
PTPRF-202ENST00000372405 SMAD9O15198 467 aaKnown RBP12.27□□□□□ -0.45
PTPRF-202ENST00000372405 NME2P1O60361 137 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 EIF1BO60739 113 aaKnown RBP12.27□□□□□ -0.45
PTPRF-202ENST00000372405 SULT1C4O75897 302 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms