RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CDK20Q8IZL9 346 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 DEPDC4Q8N2C3 294 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 OR52J3Q8NH60 311 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 HTRA1Q92743 480 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 FAM46AQ96IP4 442 aaKnown RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 DHRS9Q9BPW9 319 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 IL1RAPQ9NPH3 570 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 ZNF346Q9UL40 294 aaKnown RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 ACANP16112 2415 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 IGKV1D-43A0A0B4J1Z2 117 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 TCRBV5S2A0A599 114 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CENPBD1B2RD01 187 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CASQ2O14958 399 aaPredicted RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 ITGA2P17301 1181 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 TTKP33981 857 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CDKN1AP38936 164 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CAPZA2P47755 286 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 LIMS1P48059 325 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 IDH3GP51553 393 aaPredicted RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 CLRN1P58418 232 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 ANKDD1AQ495B1 522 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 ZFP1Q6P2D0 407 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 PIWIL3Q7Z3Z3 882 aaKnown RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 SKA3Q8IX90 412 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 OR4K5Q8NGD3 323 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 FGFBP3Q8TAT2 258 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 NMD3Q96D46 503 aaKnown RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 KCNK17Q96T54 332 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 KATNB1Q9BVA0 655 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 GRIP2Q9C0E4 1043 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 TMEM38BQ9NVV0 291 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 ATP23Q9Y6H3 246 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 FLNAP21333 2647 aaKnown RBP13.74□□□□□ -0.21
CLN3-201ENST00000333496 STAMBPO95630 424 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 FABP3P05413 133 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 CD99P14209 185 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 ARR3P36575 388 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 RPL27P61353 136 aaKnown RBP13.74□□□□□ -0.21
CLN3-201ENST00000333496 PIGFQ07326 219 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 CHD3Q12873 2000 aaKnown RBP13.74□□□□□ -0.21
CLN3-201ENST00000333496 TOP3AQ13472 1001 aaPredicted RBP13.74□□□□□ -0.21
CLN3-201ENST00000333496 ZBED5Q49AG3 693 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 C11orf71Q6IPW1 123 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 PRSS57Q6UWY2 283 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 SLC22A24Q8N4F4 322 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 CLDN22Q8N7P3 220 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 ZNF519Q8TB69 540 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 PYDC1Q8WXC3 89 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 TSPAN32Q96QS1 320 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 GPA33Q99795 319 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 MUC13Q9H3R2 512 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 MOV10Q9HCE1 1003 aaKnown RBP13.74□□□□□ -0.21
CLN3-201ENST00000333496 DLL4Q9NR61 685 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 FAIMQ9NVQ4 179 aa13.74□□□□□ -0.21
CLN3-201ENST00000333496 SH3PXD2BA1X283 911 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 ARHGEF9O43307 516 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 PTP4A3O75365 173 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 GADD45GO95257 159 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 SLC2A10O95528 541 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 CRYAAP02489 173 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 PATE4P0C8F1 98 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 CD79AP11912 226 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 FXYD6P3P58550 94 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 SPIBQ01892 262 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 FMODQ06828 376 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 NPRL3Q12980 569 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 GSG1Q2KHT4 349 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 C10orf128Q5T292 105 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 LCN8Q6JVE9 175 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 HDDC2Q7Z4H3 204 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 DHFR2Q86XF0 187 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 ZDHHC21Q8IVQ6 265 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 MUC15Q8N387 334 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 GTPBP3Q969Y2 492 aaKnown RBP13.73□□□□□ -0.21
CLN3-201ENST00000333496 MS4A3Q96HJ5 214 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 SIGLEC7Q9Y286 467 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 TMEM5Q9Y2B1 443 aa13.73□□□□□ -0.21
CLN3-201ENST00000333496 DPPA5A6NC42 116 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 NDUFS7O75251 213 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 OR8G3PP0DMU2 310 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ZNF14P17017 642 aaPredicted RBP13.72□□□□□ -0.21
CLN3-201ENST00000333496 RRM2P31350 389 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ACVR1BP36896 505 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 FABP6P51161 128 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ATP5J2P56134 94 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 RAB1AP62820 205 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 AGAP6Q5VW22 663 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ZNF544Q6NX49 715 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ZER1Q7Z7L7 766 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 SPATA24Q86W54 205 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 LRGUKQ96M69 825 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 SH3GL3Q99963 347 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 TRIM15Q9C019 465 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 CBLN4Q9NTU7 201 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ADAM18Q9Y3Q7 739 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 IGHV2OR16-5A0A0B4J2B6 119 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 APOBEC3AP31941 199 aaPredicted RBP13.72□□□□□ -0.21
CLN3-201ENST00000333496 GIPRP48546 466 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ERVK-25P63136 954 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 HGFACQ04756 655 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 331.8 ms