RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ZNF701M0R085 212 aaPredicted RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 XKRYO14609 159 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 WBP4O75554 376 aaKnown RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 GPANK1O95872 356 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 PGA4P0DJD7 388 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 PGA3P0DJD8 388 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 CLUP10909 449 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 SRSF1Q07955 248 aaKnown RBP eCLIP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF362Q5T0B9 420 aaPredicted RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 RPL13AP3Q6NVV1 102 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF474Q6S9Z5 364 aaPredicted RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 LNX2Q8N448 690 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 OR51L1Q8NGJ5 315 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 OR9Q1Q8NGQ5 310 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 OR6K3Q8NGY3 331 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 CA5BP1Q8WTZ4 195 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 ZFAND2BQ8WV99 257 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 IL4I1Q96RQ9 567 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 SFXN3Q9BWM7 321 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 CRLF2Q9HC73 371 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 SRA1Q9HD15 236 aaKnown RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 RPRD1BQ9NQG5 326 aaKnown RBP16.04■□□□□ 0.16
HMGA1-201ENST00000311487 RASSF1Q9NS23 344 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 COQ3Q9NZJ6 369 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 UPB1Q9UBR1 384 aa16.04■□□□□ 0.16
HMGA1-201ENST00000311487 OR6C68A6NDL8 312 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 DCTN6O00399 190 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 SLC43A1O75387 559 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 DCKP27707 260 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 OPRM1P35372 400 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 SMN1Q16637 294 aaKnown RBP16.03■□□□□ 0.16
HMGA1-201ENST00000311487 LRFN4Q6PJG9 635 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 JAZF1Q86VZ6 243 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 TMEM45BQ96B21 275 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 HCAR1Q9BXC0 346 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 SLCO5A1Q9H2Y9 848 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 DUSP21Q9H596 190 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 PLSCR4Q9NRQ2 329 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 PARPBPQ9NWS1 579 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 ZNF629Q9UEG4 869 aaPredicted RBP16.03■□□□□ 0.16
HMGA1-201ENST00000311487 TPRKBQ9Y3C4 175 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 SNX5Q9Y5X3 404 aa16.03■□□□□ 0.16
HMGA1-201ENST00000311487 HELZ2Q9BYK8 2649 aaKnown RBP16.03■□□□□ 0.16
HMGA1-201ENST00000311487 ZAR1LA6NP61 321 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 J3QKU1 62 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 DVL2O14641 736 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 PRKYO43930 277 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 LYZL6O75951 148 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 AGFG2O95081 481 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 IGHG1P01857 330 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 IGHMP01871 453 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 QDPRP09417 244 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 PCMT1P22061 227 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 OR3A2P47893 321 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 CSNK1A1P48729 337 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 SMSP52788 366 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 SLC35A2P78381 396 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 CRMP1Q14194 572 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 SNAPC1Q16533 368 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 GPR107Q5VW38 600 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.02■□□□□ 0.16
HMGA1-201ENST00000311487 ZNRF4Q8WWF5 429 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 KCNK17Q96T54 332 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 RBM24Q9BX46 236 aaKnown RBP16.02■□□□□ 0.16
HMGA1-201ENST00000311487 MRPL13Q9BYD1 178 aaKnown RBP16.02■□□□□ 0.16
HMGA1-201ENST00000311487 NDEL1Q9GZM8 345 aa16.02■□□□□ 0.16
HMGA1-201ENST00000311487 GRNP28799 593 aaKnown RBP16.02■□□□□ 0.15
HMGA1-201ENST00000311487 CDAP32320 146 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 SH3BGRP55822 239 aaPredicted RBP16.02■□□□□ 0.15
HMGA1-201ENST00000311487 FAM27E3Q08E93 113 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 B3GLCTQ6Y288 498 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 C20orf196Q8IYI0 205 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 GPR137CQ8N3F9 429 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 SLC37A3Q8NCC5 494 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 NOXO1Q8NFA2 376 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 ZNF420Q8TAQ5 688 aaPredicted RBP16.02■□□□□ 0.15
HMGA1-201ENST00000311487 FAM81AQ8TBF8 368 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 MCHR2Q969V1 340 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 MUL1Q969V5 352 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 C12orf43Q96C57 262 aaKnown RBP16.02■□□□□ 0.15
HMGA1-201ENST00000311487 ZFP3Q96NJ6 502 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 DOK1Q99704 481 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 RHNO1Q9BSD3 238 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 NUAK2Q9H093 628 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 GP6Q9HCN6 339 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 SCN3BQ9NY72 215 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 GLTPQ9NZD2 209 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 ERVK-18Q9QC07 812 aa16.02■□□□□ 0.15
HMGA1-201ENST00000311487 FOXD3Q9UJU5 478 aaPredicted RBP16.02■□□□□ 0.15
HMGA1-201ENST00000311487 SLC22A23A1A5C7 686 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 PRSS37A4D1T9 235 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 ARPC3O15145 178 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 SURF4O15260 269 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 TLX2O43763 284 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-201ENST00000311487 SLC16A7O60669 478 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 FAM20BO75063 409 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 CHRNB4P30926 498 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 CENPAP49450 140 aa16.01■□□□□ 0.15
HMGA1-201ENST00000311487 ROR2Q01974 943 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms