RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CDV3Q9UKY7 258 aaKnown RBP18.25■□□□□ 0.51
SYNGAP1-227ENST00000638142 HS3ST3A1Q9Y663 406 aa18.25■□□□□ 0.51
SYNGAP1-227ENST00000638142 ARPC4-TTLL3A0A0A6YYG9 625 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 MAT1AQ00266 395 aaKnown RBP18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 ERV3-1Q14264 604 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 EEF1A1P5Q5VTE0 462 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 DPY19L4Q7Z388 723 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 AVL9Q8NBF6 648 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR13H1Q8NG92 308 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR5M1Q8NGP8 315 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR10AC1Q8NH08 325 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 CXorf58Q96LI9 332 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 DCBLD2Q96PD2 775 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 SEMA4CQ9C0C4 833 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 B3GNT4Q9C0J1 378 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 H7C1C5 153 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 ARPC5O15511 151 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 PPP3CBP16298 524 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 CSF2RBP32927 897 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 H2BFSP57053 126 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 LCN6P62502 163 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 TMUB2Q71RG4 321 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 MED25Q71SY5 747 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR2AK2Q8NG84 335 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR51A4Q8NGJ6 313 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 PHOSPHO1Q8TCT1 267 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 C4orf45Q96LM5 186 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 INTS14Q96SY0 518 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 PFDN2Q9UHV9 154 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 MPDZO75970 2070 aa18.24■□□□□ 0.51
SYNGAP1-227ENST00000638142 F5H5P2 479 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 H0YC42 278 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 OIP5O43482 229 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 SRPX2O60687 465 aaPredicted RBP18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 RLN1P04808 185 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 AKAIN1P0CW23 69 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 POU3F2P20265 443 aaPredicted RBP18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 MAOAP21397 527 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 RABIFP47224 123 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 TPMTP51580 245 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 HHEXQ03014 270 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 DMWDQ09019 674 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 CCINQ13939 588 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 MPPED2Q15777 294 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 TFAP2EQ6VUC0 442 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 PRSS35Q8N3Z0 413 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 CDCA3Q99618 268 aaPredicted RBP18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 MED11Q9P086 117 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 LBX1P52954 281 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 SSBP1Q04837 148 aaKnown RBP18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 SFRP5Q5T4F7 317 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 CBLN3Q6UW01 205 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 KRT77Q7Z794 578 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 SLC22A18ASQ8N1D0 253 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 ZSCAN1Q8NBB4 408 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR51D1Q8NGF3 324 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR8K3Q8NH51 312 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 ASB13Q8WXK3 278 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 LMF1Q96S06 567 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 F5P12259 2224 aa18.23■□□□□ 0.51
SYNGAP1-227ENST00000638142 SCDO00767 359 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 ZNF264O43296 627 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 CDC40O60508 579 aaKnown RBP eCLIP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 NSA2O95478 260 aaKnown RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 CELA2BP08218 269 aaPredicted RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 GABRA1P14867 456 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 CTHP32929 405 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 HSD17B7P56937 341 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 TMEM31Q5JXX7 168 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 FDX2Q6P4F2 183 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 TAF8Q7Z7C8 310 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 SLC17A5Q9NRA2 495 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR2W5A6NFC9 320 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 ATP6V1G2-DDX39BF2Z307 99 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 TRANK1O15050 2925 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 CLPSP04118 112 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 FGF2P09038 288 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 ZNF35P13682 527 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 GTF2F2P13984 249 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 MST1P26927 711 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 GALNSP34059 522 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 KIR3DL2P43630 455 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 POU3F4P49335 361 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 EFNB2P52799 333 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 GMFBP60983 142 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 TFF2Q03403 129 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 ZNF273Q14593 569 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 FAM109BQ6ICB4 259 aaPredicted RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 OR4D10Q8NGI6 311 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 KTI12Q96EK9 354 aaPredicted RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 PELOQ9BRX2 385 aaKnown RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 ARL6Q9H0F7 186 aa18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 YBX2Q9Y2T7 364 aaKnown RBP18.22■□□□□ 0.51
SYNGAP1-227ENST00000638142 SLC22A23A1A5C7 686 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 TOR1AO14656 332 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 SIX6O95475 246 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 LPLP06858 475 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 IL32P24001 234 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 C2orf68Q2NKX9 166 aa18.21■□□□□ 0.51
SYNGAP1-227ENST00000638142 MUC20Q8N307 709 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms