RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HIST3H2AQ7L7L0 130 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 NANOGNBQ7Z5D8 188 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 VTCN1Q7Z7D3 282 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 CDK20Q8IZL9 346 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 ZCCHC24Q8N2G6 241 aaKnown RBP12.82□□□□□ -0.36
CLN3-213ENST00000565047 SVOPLQ8N434 492 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 LRRC75AQ8NAA5 344 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 ASB10Q8WXI3 467 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 HIST1H2ACQ93077 130 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 MCHR2Q969V1 340 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 SGTBQ96EQ0 304 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 FOXN4Q96NZ1 517 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 ZNF347Q96SE7 839 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 MDFIQ99750 246 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 HOPXQ9BPY8 73 aaPredicted RBP12.82□□□□□ -0.36
CLN3-213ENST00000565047 HIF3AQ9Y2N7 669 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 AP3M1Q9Y2T2 418 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 CHD3Q12873 2000 aaKnown RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 IGKV1D-43A0A0B4J1Z2 117 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 CENPBD1B2RD01 187 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 NDUFS8O00217 210 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 PIP5K1CO60331 668 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 UBL3O95164 117 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 SERPINA5P05154 406 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 USF1P22415 310 aaPredicted RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 GLRXP35754 106 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 PTDSS1P48651 473 aaKnown RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 PDLIM4P50479 330 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 SNTB2Q13425 540 aaKnown RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 C10orf128Q5T292 105 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 KRT80Q6KB66 452 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 HACD2Q6Y1H2 254 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 MRPL24Q96A35 216 aaKnown RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 PRRC1Q96M27 445 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 SH3GL3Q99963 347 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 VRK1Q99986 396 aaPredicted RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 MRPL37Q9BZE1 423 aaKnown RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 FBXO9Q9UK97 447 aaPredicted RBP12.81□□□□□ -0.36
CLN3-213ENST00000565047 MED31Q9Y3C7 131 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 UGT2A1Q9Y4X1 527 aa12.81□□□□□ -0.36
CLN3-213ENST00000565047 IGHV4-61A0A0C4DH41 118 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 LOC390937A0A1W2PQ73 354 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 HTR3EA5X5Y0 456 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 J3KTA2 159 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 ATP8B1O43520 1251 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 CCDC22O60826 627 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 STAMBPO95630 424 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 IGHG1P01857 330 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 TP53P04637 393 aaPredicted RBP12.8□□□□□ -0.36
CLN3-213ENST00000565047 MMP7P09237 267 aaPredicted RBP12.8□□□□□ -0.36
CLN3-213ENST00000565047 OR8G3PP0DMU2 310 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 UMPSP11172 480 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 ACADSP16219 412 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 MAKP20794 623 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 GIFP27352 417 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 SLC7A2P52569 658 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 ST3GAL3Q11203 375 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 RAB39AQ14964 217 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 CBLL1Q75N03 491 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 SPATA21Q7Z572 469 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 ARPINQ7Z6K5 226 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 OFCC1Q8IZS5 231 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 PAQR4Q8N4S7 273 aaPredicted RBP12.8□□□□□ -0.36
CLN3-213ENST00000565047 NOXO1Q8NFA2 376 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 HDAC2Q92769 488 aaKnown RBP12.8□□□□□ -0.36
CLN3-213ENST00000565047 NABP1Q96AH0 204 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 TPD52L3Q96J77 140 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 KCNK17Q96T54 332 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 MYOZ1Q9NP98 299 aaPredicted RBP12.8□□□□□ -0.36
CLN3-213ENST00000565047 YAE1D1Q9NRH1 226 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 INIPQ9NRY2 104 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 ABCD2Q9UBJ2 740 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 FKBP7Q9Y680 259 aa12.8□□□□□ -0.36
CLN3-213ENST00000565047 A0A1W2PRG6 482 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 A8MV72 311 aaPredicted RBP12.79□□□□□ -0.36
CLN3-213ENST00000565047 CXCR6O00574 342 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 YAP1P46937 504 aaKnown RBP12.79□□□□□ -0.36
CLN3-213ENST00000565047 GSK3BP49841 420 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 MYBPC1Q00872 1141 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 HSP90B2PQ58FF3 399 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 SLC25A47Q6Q0C1 308 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 LRP11Q86VZ4 500 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 SYT14Q8NB59 555 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 OR4K5Q8NGD3 323 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 BPIFA2Q96DR5 249 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 RAB1BQ9H0U4 201 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 TXNIPQ9H3M7 391 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 EFCAB1Q9HAE3 211 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 TMEM160Q9NX00 188 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 MYEF2Q9P2K5 600 aaKnown RBP12.79□□□□□ -0.36
CLN3-213ENST00000565047 RHCGQ9UBD6 479 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 FBXL3Q9UKT7 428 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 CMAHPQ9Y471 501 aa12.79□□□□□ -0.36
CLN3-213ENST00000565047 A0A087WUU8 490 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 VSTM5A8MXK1 200 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 RAB36O95755 333 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 IGHMP01871 453 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 ZNF26P17031 533 aaPredicted RBP12.78□□□□□ -0.36
CLN3-213ENST00000565047 DAP3P51398 398 aaKnown RBP12.78□□□□□ -0.36
CLN3-213ENST00000565047 SEC24CP53992 1094 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms