RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 NDUFAF4Q9P032 175 aa11.67□□□□□ -0.54
CLK3-216ENST00000564468 MOKQ9UQ07 419 aa11.67□□□□□ -0.54
CLK3-216ENST00000564468 JMJD1CQ15652 2540 aa11.67□□□□□ -0.54
CLK3-216ENST00000564468 TRMUO75648 421 aaKnown RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 STAMBPO95630 424 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 FABP3P05413 133 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 QDPRP09417 244 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 OR8G3PP0DMU2 310 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 CD79AP11912 226 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 B4GALT1P15291 398 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 MAKP20794 623 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 CTXN1P60606 82 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 RPL27P61353 136 aaKnown RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 VLDLRP98155 873 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 NAAAQ02083 359 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 CHRNB3Q05901 458 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 SPOCK1Q08629 439 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 HIST3H3Q16695 136 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 NRN1LQ496H8 165 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 LRFN4Q6PJG9 635 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 MUC15Q8N387 334 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 WFDC11Q8NEX6 87 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 NOXO1Q8NFA2 376 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 OR51A7Q8NH64 312 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 MOSPD2Q8NHP6 518 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 SLC7A13Q8TCU3 470 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 ZNF347Q96SE7 839 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 BDH2Q9BUT1 245 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 MRPL13Q9BYD1 178 aaKnown RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 C1orf21Q9H246 121 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 GSX1Q9H4S2 264 aaPredicted RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 BARX1Q9HBU1 254 aaPredicted RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 ACTR3BQ9P1U1 418 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 PRPF19Q9UMS4 504 aaKnown RBP11.66□□□□□ -0.54
CLK3-216ENST00000564468 AURKCQ9UQB9 309 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 RTTNQ86VV8 2226 aa11.66□□□□□ -0.54
CLK3-216ENST00000564468 A6NIZ1 184 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 ATP6V1G2-DDX39BF2Z307 99 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 hCG_2039718K7EN88 272 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 SEC14L2O76054 403 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 GADD45GO95257 159 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 RAB36O95755 333 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 IGHMP01871 453 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 CECR9P0C854 216 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 MSX2P35548 267 aaPredicted RBP11.65□□□□□ -0.54
CLK3-216ENST00000564468 GUCA1AP43080 201 aaPredicted RBP11.65□□□□□ -0.54
CLK3-216ENST00000564468 IDH3GP51553 393 aaPredicted RBP11.65□□□□□ -0.54
CLK3-216ENST00000564468 RAP1BP61224 184 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 RAP1AP62834 184 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 NPRL3Q12980 569 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 ZBED5Q49AG3 693 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 ARMC4Q5T2S8 1044 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 PODNL1Q6PEZ8 512 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 TSEN54Q7Z6J9 526 aaKnown RBP11.65□□□□□ -0.54
CLK3-216ENST00000564468 MDP1Q86V88 176 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 WDFY1Q8IWB7 410 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 SLC22A24Q8N4F4 322 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 SYT14Q8NB59 555 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 MCHR2Q969V1 340 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 DHRS1Q96LJ7 313 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 RBP7Q96R05 134 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 TNFRSF13CQ96RJ3 184 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 SEPHS2Q99611 448 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 ALG12Q9BV10 488 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 KCNN2Q9H2S1 579 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 SMURF2Q9HAU4 748 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 IL1RAPQ9NPH3 570 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 TMEM38BQ9NVV0 291 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 B3GNT2Q9NY97 397 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 FBXO9Q9UK97 447 aaPredicted RBP11.65□□□□□ -0.54
CLK3-216ENST00000564468 PMF1-BGLAPU3KQ54 211 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 V9GYQ6 96 aa11.65□□□□□ -0.54
CLK3-216ENST00000564468 VPS13CQ709C8 3753 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 CHD3Q12873 2000 aaKnown RBP11.64□□□□□ -0.55
CLK3-216ENST00000564468 TRAV27A0A087WT01 109 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 FAM171A2A8MVW0 826 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 PDE5AO76074 875 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 PTHP01270 115 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 CD8AP01732 235 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 HLA-HP01893 362 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 SEMG1P04279 462 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 NPR2P20594 1047 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 RPL4P36578 427 aaKnown RBP11.64□□□□□ -0.55
CLK3-216ENST00000564468 ACVR1BP36896 505 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 IFNGR2P38484 337 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 GPR4P46093 362 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
CLK3-216ENST00000564468 RAB1AP62820 205 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 LSM11P83369 360 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLK3-216ENST00000564468 SPIBQ01892 262 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 CD47Q08722 323 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 TOP3AQ13472 1001 aaPredicted RBP11.64□□□□□ -0.55
CLK3-216ENST00000564468 TRIM25Q14258 630 aaKnown RBP11.64□□□□□ -0.55
CLK3-216ENST00000564468 SLC36A2Q495M3 483 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 THEM4Q5T1C6 240 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 C10orf128Q5T292 105 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 TMEM53Q6P2H8 277 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 TBPL2Q6SJ96 375 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 B3GLCTQ6Y288 498 aa11.64□□□□□ -0.55
CLK3-216ENST00000564468 TRPM8Q7Z2W7 1104 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms