RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C4orf45Q96LM5 186 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 DCBLD2Q96PD2 775 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 MESP1Q9BRJ9 268 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 ATXN7L1Q9ULK2 861 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 SRPK3Q9UPE1 567 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 FOXJ3Q9UPW0 622 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 ARID1BQ8NFD5 2236 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 TRAV8-7A0A075B6U6 113 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 GABARAPH6UMI1 98 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 K7ESF4 209 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 SLC16A7O60669 478 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RAF1P04049 648 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RAB40ALP0C0E4 278 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 STOMP27105 288 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 CENPAP49450 140 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RASGEF1BQ0VAM2 473 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 ZNF574Q6ZN55 896 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 DNAAF1Q8NEP3 725 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RAB40AQ8WXH6 277 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 ATOH1Q92858 354 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 OR2M2Q96R28 347 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 OR8B4Q96RC9 309 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 ULBP3Q9BZM4 244 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 SEMA4CQ9C0C4 833 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 SLC7A5P2Q9GIP4 190 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 OR51J1Q9H342 316 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 MRPL15Q9P015 296 aaKnown RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 CABIN1Q9Y6J0 2220 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 IGLV1-36A0A0B4J1U3 117 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 OR6A2O95222 327 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 IGHMP01871 453 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 H2AFB2P0C5Z0 115 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 RAG2P55895 527 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 RPS15P62841 145 aaKnown RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 MEP1BQ16820 701 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ODF4Q2M2E3 257 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 PTCRAQ6ISU1 281 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 FDX2Q6P4F2 183 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 TMEM71Q6P5X7 295 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 LRRN1Q6UXK5 716 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SLC35D2Q76EJ3 337 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ANKRD37Q7Z713 158 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 APCDD1LQ8NCL9 501 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 OR11H7Q8NGC8 314 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ZNF417Q8TAU3 575 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 TMEM106AQ96A25 262 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ZNF587Q96SQ5 575 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 GON7Q9BXV9 100 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ELOVL3Q9HB03 270 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 MRPL22Q9NWU5 206 aaKnown RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 AKAP7Q9P0M2 348 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 IGLV3-12A0A075B6K2 115 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SLC22A23A1A5C7 686 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 CCDC85CA6NKD9 419 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 H3BSH0 61 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SULT1B1O43704 296 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ZNF354AO60765 605 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 AHSA1O95433 338 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ART1P52961 327 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SLC26A5P58743 744 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SLC17A1Q14916 467 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 GSG1Q2KHT4 349 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 WDR38Q5JTN6 314 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 LAMTOR1Q6IAA8 161 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 OR5M10Q6IEU7 315 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 RABEPKQ7Z6M1 372 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 TMPRSS12Q86WS5 348 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 MISPQ8IVT2 679 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 SLC38A9Q8NBW4 561 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 NFAM1Q8NET5 270 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 ASB17Q8WXJ9 295 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 MIB2Q96AX9 1013 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 CLDN23Q96B33 292 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 HAVCR1Q96D42 359 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ZNF275Q9NSD4 429 aaPredicted RBP16.24■□□□□ 0.19
VIM-209ENST00000544301 KLHL9Q9P2J3 617 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 RCE1Q9Y256 329 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 ETV7Q9Y603 341 aa16.24■□□□□ 0.19
VIM-209ENST00000544301 CPAMD8Q8IZJ3 1885 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 ANXA2P2A6NMY6 339 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 GPR171O14626 319 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 TOX3O15405 576 aaPredicted RBP16.23■□□□□ 0.19
VIM-209ENST00000544301 KRT33AO76009 404 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 MAS1P04201 325 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 ANXA2P07355 339 aaKnown RBP16.23■□□□□ 0.19
VIM-209ENST00000544301 CTLA4P16410 223 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 CDK2P24941 298 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 CXCL12P48061 93 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 CCR9P51686 369 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 FBXW4P57775 412 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 ETFDHQ16134 617 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 TMEM69Q5SWH9 247 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 CD276Q5ZPR3 534 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 MCHR2Q969V1 340 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 PHF21AQ96BD5 680 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 HRASLSQ9HDD0 168 aa16.23■□□□□ 0.19
VIM-209ENST00000544301 MRPL39Q9NYK5 338 aaKnown RBP16.23■□□□□ 0.19
VIM-209ENST00000544301 C2orf72A6NCS6 295 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 CENPBD1B2RD01 187 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms