RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GALEQ14376 348 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 THEM4Q5T1C6 240 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 ABLIM2Q6H8Q1 611 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 TMPRSS11AQ6ZMR5 421 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 FCRLAQ7L513 359 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 SLC16A9Q7RTY1 509 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 RBMXL3Q8N7X1 1067 aaKnown RBP18.72■□□□□ 0.59
VPS28-208ENST00000527797 NOXO1Q8NFA2 376 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 OR52N1Q8NH53 320 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 FNDC8Q8TC99 324 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 ABHD17AQ96GS6 310 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 TIMP4Q99727 224 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 RSL24D1Q9UHA3 163 aaKnown RBP18.72■□□□□ 0.59
VPS28-208ENST00000527797 CAB39Q9Y376 341 aaPredicted RBP18.72■□□□□ 0.59
VPS28-208ENST00000527797 A0A1W2PQL4 384 aaPredicted RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 AKAP8O43823 692 aaKnown RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 CYTIPO60759 359 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 KHDRBS3O75525 346 aaKnown RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 TFP02787 698 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 CPN1P15169 458 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 CARD17Q5XLA6 110 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 LYPD4Q6UWN0 246 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 CHMP1BQ7LBR1 199 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 SMAP2Q8WU79 429 aaPredicted RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 YIPF6Q96EC8 236 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 ZNF385AQ96PM9 386 aaKnown RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 ALG8Q9BVK2 526 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 FUNDC2Q9BWH2 189 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 MCTS1Q9ULC4 181 aaKnown RBP18.71■□□□□ 0.59
VPS28-208ENST00000527797 B3GNT3Q9Y2A9 372 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 MED12Q93074 2177 aa18.71■□□□□ 0.59
VPS28-208ENST00000527797 TVP23AA6NH52 213 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ZNF716A6NP11 495 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 CENPBD1B2RD01 187 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 HLA-DQA2P01906 255 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 LIPAP38571 399 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ZNF85Q03923 595 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 GLO1Q04760 184 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 FMODQ06828 376 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ETFDHQ16134 617 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ERI1Q8IV48 349 aaKnown RBP18.71■□□□□ 0.58
VPS28-208ENST00000527797 TIGD4Q8IY51 512 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ZIC4Q8N9L1 334 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 ZNF420Q8TAQ5 688 aaPredicted RBP18.71■□□□□ 0.58
VPS28-208ENST00000527797 GATAD2BQ8WXI9 593 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 EXTL1Q92935 676 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 MARCH7Q9H992 704 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 SPRR3Q9UBC9 169 aa18.71■□□□□ 0.58
VPS28-208ENST00000527797 COA3Q9Y2R0 106 aaPredicted RBP18.71■□□□□ 0.58
VPS28-208ENST00000527797 NOL3O60936 208 aaKnown RBP18.7■□□□□ 0.58
VPS28-208ENST00000527797 NR2C1P13056 603 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 HCCSP53701 268 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 TMBIM6P55061 237 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 CXADRP78310 365 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 RASGEF1BQ0VAM2 473 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 RPUSD3Q6P087 351 aaKnown RBP18.7■□□□□ 0.58
VPS28-208ENST00000527797 ZNF322Q6U7Q0 402 aaPredicted RBP18.7■□□□□ 0.58
VPS28-208ENST00000527797 WDYHV1Q96HA8 205 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 OPALINQ96PE5 141 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 INTS14Q96SY0 518 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 ARHGAP9Q9BRR9 750 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 ISYNA1Q9NPH2 558 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 FLVCR1Q9Y5Y0 555 aa18.7■□□□□ 0.58
VPS28-208ENST00000527797 FREM3P0C091 2139 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 A0A1B0GVC2 190 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 ZNF701M0R085 212 aaPredicted RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 SCG5P05408 212 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 CD36P16671 472 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 CD79BP40259 229 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 MLLT11Q13015 90 aaPredicted RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 TSTQ16762 297 aaKnown RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 SNRNP27Q8WVK2 155 aaKnown RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 SPRYD4Q8WW59 207 aaPredicted RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 PNPLA2Q96AD5 504 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 ISOC1Q96CN7 298 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 MRPL48Q96GC5 212 aaKnown RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 OR2M2Q96R28 347 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 TAAR6Q96RI8 345 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 MYCBPQ99417 103 aaPredicted RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 MNTQ99583 582 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 YIPF3Q9GZM5 350 aa18.69■□□□□ 0.58
VPS28-208ENST00000527797 NAA50Q9GZZ1 169 aaKnown RBP18.69■□□□□ 0.58
VPS28-208ENST00000527797 APC2O95996 2303 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 A0A087WV48 116 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 C1QTNF9BB2RNN3 333 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 ZNF670-ZNF695F2Z2N8 137 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 GPANK1O95872 356 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 C1QTNF9P0C862 333 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 TGFBR2P37173 567 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 RGS6P49758 472 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 HSF2Q03933 536 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 DOC2BQ14184 412 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 INAQ16352 499 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 C3AR1Q16581 482 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 HIST3H3Q16695 136 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 ANKRD13BQ86YJ7 626 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 ZNF485Q8NCK3 441 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 OR6N1Q8NGY5 312 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 OR6N2Q8NGY6 317 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 NSMAFQ92636 917 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms