RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 ARR3P36575 388 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 GPR4P46093 362 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SLC25A1P53007 311 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 BIDP55957 195 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 LSM6P62312 80 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SIRPAP78324 504 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 ROR2Q01974 943 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 GLO1Q04760 184 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 TMED1Q13445 227 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 RIPK1Q13546 671 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 KRR1Q13601 381 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 KCNMB1Q16558 191 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SLC36A3Q495N2 470 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 TSPO2Q5TGU0 170 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 TBPL2Q6SJ96 375 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 UBE2J2Q8N2K1 259 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 LRRC17Q8N6Y2 441 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 ATG16L2Q8NAA4 619 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 OR13C2Q8NGS9 318 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 OR51A7Q8NH64 312 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 RNF166Q96A37 237 aaPredicted RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 NMD3Q96D46 503 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SLC38A2Q96QD8 506 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 TNFRSF13CQ96RJ3 184 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 MED18Q9BUE0 208 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 KATNB1Q9BVA0 655 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 OPN3Q9H1Y3 402 aaPredicted RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 KCNN2Q9H2S1 579 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 VCXQ9H320 206 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 VCX3BQ9H321 246 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 NELFAQ9H3P2 528 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 ESRP2Q9H6T0 727 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SIAEQ9HAT2 523 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 NTN4Q9HB63 628 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 GPR35Q9HC97 309 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 NPDC1Q9NQX5 325 aaPredicted RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 PAPOLBQ9NRJ5 636 aaKnown RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 CMC2Q9NRP2 79 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 SLC7A10Q9NS82 523 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 CRNNQ9UBG3 495 aaPredicted RBP7.45□□□□□ -1.22
PDGFC-205ENST00000506880 MOKQ9UQ07 419 aa7.45□□□□□ -1.22
PDGFC-205ENST00000506880 TRAV27A0A087WT01 109 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 TEX13CA0A0J9YWL9 993 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SLC22A23A1A5C7 686 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 RIIAD1A6NNX1 92 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 C11orf98E9PRG8 122 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 BHLHE40O14503 412 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 PRODHO43272 600 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 PIP5K1CO60331 668 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 MPZL2O60487 215 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 TRMUO75648 421 aaKnown RBP7.44□□□□□ -1.22
PDGFC-205ENST00000506880 TIPRLO75663 272 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 CLDN1O95832 211 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ITGA5P08648 1049 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 COX5BP10606 129 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 IGHV1-2P23083 117 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ACVR1BP36896 505 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 GIPRP48546 466 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SELENOPP49908 381 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ALDH3A2P51648 485 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 UBE2NP61088 152 aaKnown RBP7.44□□□□□ -1.22
PDGFC-205ENST00000506880 PPP2R2BQ00005 443 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 CDK5Q00535 292 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 LGALS3BPQ08380 585 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 FAPQ12884 760 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 LAPTM4AQ15012 233 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 GABRA6Q16445 453 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SLC36A2Q495M3 483 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SLC35D3Q5M8T2 416 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 FAM27BQ5VT28 67 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SP5Q6BEB4 398 aaPredicted RBP7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ADAM5Q6NVV9 412 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 TMEM108Q6UXF1 575 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 MEX3BQ6ZN04 569 aaKnown RBP7.44□□□□□ -1.22
PDGFC-205ENST00000506880 LUZP2Q86TE4 346 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ZBTB46Q86UZ6 589 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 JAZF1Q86VZ6 243 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 P3H2Q8IVL5 708 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 OR1K1Q8NGR3 316 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 OR2T4Q8NH00 348 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 FOXB1Q99853 325 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 IFT27Q9BW83 186 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 GABARAPL3Q9BY60 117 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 GRIP2Q9C0E4 1043 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ACTR6Q9GZN1 396 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 C12orf49Q9H741 205 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 CRLF2Q9HC73 371 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 SLC17A5Q9NRA2 495 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 KRT84Q9NSB2 600 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 TBC1D23Q9NUY8 699 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 CLEC4AQ9UMR7 237 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 ROS1P08922 2347 aa7.44□□□□□ -1.22
PDGFC-205ENST00000506880 HECTD1Q9ULT8 2610 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 NKX2-6A6NCS4 301 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 SNTNA6NMZ2 147 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 C12orf71A8MTZ7 269 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 VSTM5A8MXK1 200 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 LRRN3E7EW58 273 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 H3BNX3 289 aa7.43□□□□□ -1.22
PDGFC-205ENST00000506880 H3BSA7 217 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms