RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SLC9A3	P48764	834 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	HMGA2	P52926	109 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	EGR4	Q05215	589 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	IKZF1	Q13422	519 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	MICA	Q29983	383 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ANKDD1A	Q495B1	522 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	BEX5	Q5H9J7	111 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	TBPL2	Q6SJ96	375 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	PAQR6	Q6TCH4	344 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	NANOGNB	Q7Z5D8	188 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	STK32C	Q86UX6	486 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	HIPK1	Q86Z02	1210 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	NRM	Q8IXM6	262 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	TMEM99	Q8N816	258 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	OR4K5	Q8NGD3	323 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	OR5J2	Q8NH18	312 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	FNDC9	Q8TBE3	224 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	SLC7A13	Q8TCU3	470 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	GIPC3	Q8TF64	312 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	DUS3L	Q96G46	650 aa	Known RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	GMPPA	Q96IJ6	420 aa	Predicted RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ADGRG7	Q96K78	797 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	PRSS27	Q9BQR3	290 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	SF3B5	Q9BWJ5	86 aa	Known RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	FKRP	Q9H9S5	495 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF701	Q9NV72	531 aa	Predicted RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	PDP1	Q9P0J1	537 aa	Predicted RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	CLEC4A	Q9UMR7	237 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	PROCR	Q9UNN8	238 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	B3GALT5	Q9Y2C3	310 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ARFGEF3	Q5TH69	2177 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	TRBV4-1	A0A0J9YWV2	114 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520		A0A1W2PRG6	482 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	SH3PXD2B	A1X283	911 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	UNC119B	A6NIH7	251 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	HS3ST1	O14792	307 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	AKAP8	O43823	692 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	CYTIP	O60759	359 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	NPIPB7	O75200	414 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ENTPD5	O75356	428 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	MRPL33	O75394	65 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	KRT33A	O76009	404 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ANXA8	P13928	327 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	PAX1	P15863	534 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	GSTM3	P21266	225 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	RPL4	P36578	427 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	CDKN1A	P38936	164 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	UGT2B15	P54855	530 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	PRPS1	P60891	318 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	PDK3	Q15120	406 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ATP6AP1	Q15904	470 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF74	Q16587	644 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF239	Q16600	458 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	CTU2	Q2VPK5	515 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ZBED5	Q49AG3	693 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	GALNT5	Q7Z7M9	940 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	CCDC103	Q8IW40	242 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	UEVLD	Q8IX04	471 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF100	Q8IYN0	542 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF611	Q8N823	705 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	SCAI	Q8N9R8	606 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ATG16L2	Q8NAA4	619 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	OR5K1	Q8NHB7	308 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	PFN4	Q8NHR9	129 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	LRTOMT	Q8WZ04	291 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	TMEM158	Q8WZ71	300 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	AKAP1	Q92667	903 aa	Known RBP eCLIP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	NRBF2	Q96F24	287 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	CENPN	Q96H22	339 aa	Predicted RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	OXGR1	Q96P68	337 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	TEX12	Q9BXU0	123 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	SRXN1	Q9BYN0	137 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	REG4	Q9BYZ8	158 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	RNF122	Q9H9V4	155 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	GP6	Q9HCN6	339 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	S100A14	Q9HCY8	104 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	MRPL39	Q9NYK5	338 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	KIF17	Q9P2E2	1029 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	KLHL13	Q9P2N7	655 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	MGAT4B	Q9UQ53	548 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	NOSIP	Q9Y314	301 aa	Known RBP	7.69	□□□□□ -1.18
USP4-213	ENST00000488520	ORC6	Q9Y5N6	252 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	LYVE1	Q9Y5Y7	322 aa		7.69	□□□□□ -1.18
USP4-213	ENST00000488520	IGKV1D-42	A0A075B6H8	117 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	KRTAP9-6	A0A140TA67	174 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	AQP7P3	A6NL99	342 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	MCIDAS	D6RGH6	385 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	C11orf98	E9PRG8	122 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PLPP3	O14495	311 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PHF1	O43189	567 aa	Predicted RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	SERPINI2	O75830	405 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	AQP8	O94778	261 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PRSS23	O95084	383 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	LYPD3	O95274	346 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	GAST	P01350	101 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	BGLAP	P02818	100 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF23	P17027	643 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	ACVR1B	P36896	505 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PCYT1A	P49585	367 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	RPS4X	P62701	263 aa	Known RBP	7.68	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms