RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CLEC2LP0C7M8 214 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CD8BP10966 210 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 BIDP55957 195 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 RAP1BP61224 184 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 RAP1AP62834 184 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 RAC1P63000 192 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 HSF2Q03933 536 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CAMK2BQ13554 666 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 OR1C1Q15619 314 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 LINC00299Q6ZSB3 139 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 DPY19L4Q7Z388 723 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 GALNT16Q8N428 558 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 INTS14Q96SY0 518 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 AMELYQ99218 206 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 PIGQQ9BRB3 760 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 MRPL13Q9BYD1 178 aaKnown RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 ZFP64Q9NPA5 681 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 GNG8Q9UK08 70 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 PTPRZ1P23471 2315 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-202ENST00000372405 NKX2-8O15522 239 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 OGG1O15527 345 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 CDRT1O95170 752 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 ABHD16AO95870 558 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 HLA-DPB1P04440 258 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 ALOX5APP20292 161 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 SDC2P34741 201 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 TAS2R43P59537 309 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 SLC35A1P78382 337 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 MXD1Q05195 221 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 SLC3A1Q07837 685 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 DCTN2Q13561 401 aaKnown RBP12.31□□□□□ -0.44
PTPRF-202ENST00000372405 CDK5R1Q15078 307 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 BTLAQ7Z6A9 289 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 GPAT4Q86UL3 456 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 UEVLDQ8IX04 471 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 MFSD4AQ8N468 514 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 OR2M7Q8NG81 312 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 OR6N2Q8NGY6 317 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 OR14L1PQ8NHC6 308 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 KCTD7Q96MP8 289 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 PPIL3Q9H2H8 161 aaKnown RBP12.31□□□□□ -0.44
PTPRF-202ENST00000372405 MMP27Q9H306 513 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 SNTG1Q9NSN8 517 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 GALNT8Q9NY28 637 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 MRM2Q9UI43 246 aaKnown RBP12.31□□□□□ -0.44
PTPRF-202ENST00000372405 KCNG2Q9UJ96 466 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 COA3Q9Y2R0 106 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-202ENST00000372405 A3GALT2U3KPV4 340 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 DCHS1Q96JQ0 3298 aa12.31□□□□□ -0.44
PTPRF-202ENST00000372405 J3QRK9 145 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 MPZL1O95297 269 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 BMP4P12644 408 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 PTGS2P35354 604 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 PSMB10P40306 273 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 CLDN20P56880 219 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SIRPAP78324 504 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 MEP1BQ16820 701 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 WIPI1Q5MNZ9 446 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 FAM205BPQ63HN1 556 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 GGNQ86UU5 652 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 OXGR1Q96P68 337 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 UCN2Q96RP3 112 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 OR2B2Q9GZK3 357 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 TPK1Q9H3S4 243 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 A0A087WV48 116 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 IGHV3-15A0A0B4J1V0 119 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 LOC102725191A0A1B0GVB3 256 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 A6NL46 340 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 TNFSF11O14788 317 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SC5DO75845 299 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 IL1AP01583 271 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 OR8G3PP0DMU2 310 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 PRKAR1AP10644 381 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 GALP22466 123 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 RFC3P40938 356 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 CASRP41180 1078 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 CAPZA2P47755 286 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 NANOS3P60323 173 aaKnown RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF829Q3KNS6 432 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 TMEM225Q6GV28 225 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SULF2Q8IWU5 870 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 OR13C5Q8NGS8 318 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 OTOSQ8NHW6 89 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 RPS4Y2Q8TD47 263 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 HSD17B8Q92506 261 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 GHSRQ92847 366 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SLC25A46Q96AG3 418 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 ADAD1Q96M93 576 aaKnown RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 KLHL15Q96M94 604 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 COQ7Q99807 217 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 FAM173AQ9BQD7 235 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SRXN1Q9BYN0 137 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 C6orf62Q9GZU0 229 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SIAEQ9HAT2 523 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 QPCTLQ9NXS2 382 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 ABI3Q9P2A4 366 aa12.3□□□□□ -0.44
PTPRF-202ENST00000372405 MRPS18CQ9Y3D5 142 aaKnown RBP12.3□□□□□ -0.44
PTPRF-202ENST00000372405 SMIM30A4D0T7 59 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 SLC35F4A4IF30 521 aa12.29□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF593O00488 134 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms