RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MRPS10P82664 201 aaKnown RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 FAM26DQ5JW98 314 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 UNQ9370/PRO34162Q6UXP9 181 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 H1FNTQ75WM6 255 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SPRED1Q7Z699 444 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 DPPA2Q7Z7J5 298 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SLC35F3Q8IY50 421 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 OR51L1Q8NGJ5 315 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 OR5M9Q8NGP3 310 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 GPR150Q8NGU9 434 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ROBO4Q8WZ75 1007 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF419Q96HQ0 510 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 C3orf30Q96M34 536 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 DIRC2Q96SL1 478 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 AMBRA1Q9C0C7 1298 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SELENOIQ9C0D9 397 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 COMMD5Q9GZQ3 224 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 HSPE1-MOB4S4R3N1 261 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SPTBP11277 2137 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 A0A0D9SG52 128 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TCRBV7S3A2A0A539 114 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TARM1B6A8C7 271 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 RAB27BO00194 218 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 HRO43593 1189 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 DNAJB5O75953 348 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SLC35E2P0CK97 266 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 GABRA1P14867 456 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 FECHP22830 423 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PTGIRP43119 386 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PHC1P78364 1004 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 RANBP10Q6VN20 620 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 GRINAQ7Z429 371 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 GTPBP8Q8N3Z3 284 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SUMF2Q8NBJ7 301 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 RAB3CQ96E17 227 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SYNPO2LQ9H987 977 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 UFSP2Q9NUQ7 469 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 GPR52Q9Y2T5 361 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CKAP5Q14008 2032 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 DNAJC25-GNG10A0A024R161 153 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 RPS10-NUDT3A0A1W2PQS6 291 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CLDN24A6NM45 220 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CXorf49A8MYA2 514 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SMAD6O43541 496 aaKnown RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 EPXP11678 715 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TAS2R19P59542 299 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SSPNQ14714 243 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PCLAFQ15004 111 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 THEM4Q5T1C6 240 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ADGRG5Q8IZF4 528 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CLDN22Q8N7P3 220 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 B3GNT7Q8NFL0 401 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 MITD1Q8WV92 249 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 MVB12AQ96EY5 273 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CDX2Q99626 313 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PDCD1LG2Q9BQ51 273 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ETAA1Q9NY74 926 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 THYN1Q9P016 225 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SIGLEC1Q9BZZ2 1709 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 LAMA4Q16363 1823 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SCN9AQ15858 1988 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 MBLAC1A4D2B0 266 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-217ENST00000637988 MS4A18H0YCH9 400 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 PTGESO14684 152 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 GFRA3O60609 400 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 S100A4P26447 101 aaKnown RBP5.65□□□□□ -1.5
SCN1A-217ENST00000637988 UBE2IP63279 158 aaKnown RBP5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR5I1Q13606 314 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 MS4A18Q3C1V0 323 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 LHFPL2Q6ZUX7 228 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 GLB1L2Q8IW92 636 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR6V1Q8N148 313 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 SEMA6DQ8NFY4 1073 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 PEBP4Q96S96 227 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 MMP27Q9H306 513 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 NT5DC2Q9H857 520 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 BIN3Q9NQY0 253 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR2M5A3KFT3 312 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 DLL1O00548 723 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 AIFM1O95831 613 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 T-ENOLP0DO92 83 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 DTYMKP23919 212 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 PGGT1BP53609 377 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 CCL7P80098 99 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 RETREG3Q86VR2 466 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR4K5Q8NGD3 323 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR1S2Q8NGQ3 325 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 SLC37A2Q8TED4 501 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 ARL11Q969Q4 196 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 CPNE4Q96A23 557 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-217ENST00000637988 RNF150Q9ULK6 438 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 OR51B4Q9Y5P0 310 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 ENPP4Q9Y6X5 453 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 KDM3BQ7LBC6 1761 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 ATAD5Q96QE3 1844 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 AQP7O14520 342 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 HSD17B6O14756 317 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 ARPC3O15145 178 aa5.65□□□□□ -1.5
SCN1A-217ENST00000637988 TFP02787 698 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms