RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NPEPL1Q8NDH3 523 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 SCARB1Q8WTV0 552 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 MOGAT1Q96PD6 335 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 NRSN2Q9GZP1 204 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 ELOVL3Q9HB03 270 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 PRTFDC1Q9NRG1 225 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 CHRNA9Q9UGM1 479 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 GPR160Q9UJ42 338 aa13.21□□□□□ -0.29
VPS35-210ENST00000568784 OR2AT4A6NND4 320 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 PRR32B1ATL7 298 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 CLDN4O14493 209 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 PPM1BO75688 479 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 RLN2P04090 185 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 SLC2A5P22732 501 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 CAPZA2P47755 286 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 RAG2P55895 527 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 H2BFSP57053 126 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 KDM8Q8N371 416 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 RPP25Q9BUL9 199 aaKnown RBP13.21□□□□□ -0.3
VPS35-210ENST00000568784 CKLFQ9UBR5 152 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 SLC17A4Q9Y2C5 497 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 HEATR5AQ86XA9 2040 aa13.21□□□□□ -0.3
VPS35-210ENST00000568784 ANKRD20A5PA0PJZ0 165 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 KLF8O95600 359 aaPredicted RBP13.2□□□□□ -0.3
VPS35-210ENST00000568784 CBX7O95931 251 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 CYB5AP00167 134 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 AKAIN1P0CW23 69 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 PSG6Q00889 435 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 TFF2Q03403 129 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 KIR2DS3Q14952 304 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 RAB11BQ15907 218 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 KLHL26Q53HC5 615 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 TMEM88Q6PEY1 159 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 DPY19L2P2Q6ZN68 376 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 PM20D2Q8IYS1 436 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ATOH1Q92858 354 aaPredicted RBP13.2□□□□□ -0.3
VPS35-210ENST00000568784 MIB2Q96AX9 1013 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 GPR89AB7ZAQ6 455 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 GNRH1P01148 92 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 GPR89BP0CG08 455 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ADRA2CP18825 462 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 TPMTP51580 245 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 MEP1BQ16820 701 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 RAB12Q6IQ22 244 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 STEAP1BQ6NZ63 245 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 UNQ6126/PRO20091Q6UXV3 157 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 FOXRED2Q8IWF2 684 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 SDR16C5Q8N3Y7 309 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ADOQ96SZ5 270 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 POFUT1Q9H488 388 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 PIPOXQ9P0Z9 390 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ZNF230Q9UIE0 474 aaPredicted RBP13.2□□□□□ -0.3
VPS35-210ENST00000568784 KCNG2Q9UJ96 466 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 HRH3Q9Y5N1 445 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 LRRK1Q38SD2 2015 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 RP1P56715 2156 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 C2orf74A8MZ97 194 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 HCRTR1O43613 425 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ACAA2P42765 397 aaKnown RBP13.2□□□□□ -0.3
VPS35-210ENST00000568784 ADPRHP54922 357 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 CDNFQ49AH0 187 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 OLFML2AQ68BL7 652 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ZNF626Q68DY1 528 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 C12orf45Q8N5I9 185 aaPredicted RBP13.2□□□□□ -0.3
VPS35-210ENST00000568784 ACBD4Q8NC06 268 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 STEAP2Q8NFT2 490 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 ASB12Q8WXK4 309 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 STACQ99469 402 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 GFI1Q99684 422 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 SLC6A7Q99884 636 aa13.2□□□□□ -0.3
VPS35-210ENST00000568784 CDC40O60508 579 aaKnown RBP eCLIP13.19□□□□□ -0.3
VPS35-210ENST00000568784 CD2P06729 351 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 MC2RQ01718 297 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 GPM6BQ13491 265 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 CBLN3Q6UW01 205 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 RHOUQ7L0Q8 258 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 FAM71CQ8NEG0 241 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 RGP1Q92546 391 aaPredicted RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 ASF1BQ9NVP2 202 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 FRRS1LQ9P0K9 344 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 MLXQ9UH92 298 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 OPN4Q9UHM6 478 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 PLCL2Q9UPR0 1127 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 PLSCR5A0PG75 271 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 DISC1C4P0D8 188 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 KRBOX1C9JBD0 128 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 SCDO00767 359 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 TOR1AO14656 332 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 GSTZ1O43708 216 aaPredicted RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 GAAP10253 952 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 AKR1C4P17516 323 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 CXCR1P25024 350 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 FCRL6Q6DN72 434 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 ARMC10Q8N2F6 343 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 RSC1A1Q92681 617 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 TSNAXQ99598 290 aaKnown RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 JAM3Q9BX67 310 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 MRM2Q9UI43 246 aaKnown RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 SERINC4A6NH21 518 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 KCNAB3O43448 404 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms