RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ASF1BQ9NVP2 202 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 PARPBPQ9NWS1 579 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 WARS2Q9UGM6 360 aaKnown RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 NOSIPQ9Y314 301 aaKnown RBP11.41□□□□□ -0.58
CLK3-214ENST00000564096 EMC9Q9Y3B6 208 aa11.41□□□□□ -0.58
CLK3-214ENST00000564096 PCNX3Q9H6A9 2034 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 SLC35F4A4IF30 521 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 EFCAB10A6NFE3 127 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 CD8B2A6NJW9 211 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 FAM183AA6NL82 134 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 MRPL33O75394 65 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 TRMUO75648 421 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 AQP8O94778 261 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 PGA4P0DJD7 388 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 PGA3P0DJD8 388 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 SPI1P17947 270 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 EEF1B2P24534 225 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 CDKN2AP42771 156 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 EFNB1P98172 346 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 ZNF91Q05481 1191 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 PRR30Q53SZ7 412 aaPredicted RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 C1orf185Q5T7R7 199 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 AADACL4Q5VUY2 407 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 NSUN5P2Q63ZY6 315 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 AAED1Q7RTV5 226 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 NPEPL1Q8NDH3 523 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 ZNF540Q8NDQ6 660 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 OR9Q1Q8NGQ5 310 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 OR6K6Q8NGW6 343 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 OR6N1Q8NGY5 312 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 CPT1CQ8TCG5 803 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 INTS12Q96CB8 462 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 ZFP3Q96NJ6 502 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 ZNF385AQ96PM9 386 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 RBP7Q96R05 134 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 OR2M2Q96R28 347 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 KCNK17Q96T54 332 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 RACGAP1Q9H0H5 632 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 OR51V1Q9H2C8 321 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 PLCXD1Q9NUJ7 323 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 CNOT2Q9NZN8 540 aaKnown RBP11.4□□□□□ -0.58
CLK3-214ENST00000564096 MOKQ9UQ07 419 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 FKBP7Q9Y680 259 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 LOC400499M0QZD8 3231 aa11.4□□□□□ -0.58
CLK3-214ENST00000564096 MPDZO75970 2070 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 SLC22A23A1A5C7 686 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 MAGEA13PA6NCF6 341 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 OR6C68A6NDL8 312 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 SLC19A2O60779 497 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 SS18L1O75177 396 aaPredicted RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 KHDRBS3O75525 346 aaKnown RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 SMNDC1O75940 238 aaKnown RBP eCLIP11.39□□□□□ -0.596e-7■■□□□ 13.7
CLK3-214ENST00000564096 YES1P07947 543 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 DBTP11182 482 aaKnown RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 PIPP12273 146 aaPredicted RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 CRHBPP24387 322 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 ATP6V1E1P36543 226 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 MTNR1AP48039 350 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 NUDT6P53370 316 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 PER3P56645 1201 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 GLO1Q04760 184 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 NFATC3Q12968 1075 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 CAMK2DQ13557 499 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 APOFQ13790 326 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 THEM4Q5T1C6 240 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 CARD17Q5XLA6 110 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 MEPCEQ7L2J0 689 aaKnown RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 FGD2Q7Z6J4 655 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 GPR137CQ8N3F9 429 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 POMGNT2Q8NAT1 580 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 ST6GALNAC3Q8NDV1 305 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 MYDGFQ969H8 173 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 UBE2FQ969M7 185 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 APH1AQ96BI3 265 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 TXNDC15Q96J42 360 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 EMC6Q9BV81 110 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 ULBP2Q9BZM5 246 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 NMNAT2Q9BZQ4 307 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 ZNF696Q9H7X3 374 aa11.39□□□□□ -0.59
CLK3-214ENST00000564096 TPRP12270 2363 aaKnown RBP11.39□□□□□ -0.59
CLK3-214ENST00000564096 MBD3L4A6NDZ8 208 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 MBD3L3A6NE82 208 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 MBD3L5A6NJ08 208 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 ATXN7O15265 892 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 SLC16A7O60669 478 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 MRPS14O60783 128 aaKnown RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 KRT33AO76009 404 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 GLCEO94923 617 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 FADS2O95864 444 aaKnown RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 TGM6O95932 706 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 SLC2A5P22732 501 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 AGTR1P30556 359 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 RAB40BQ12829 278 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 SMN1Q16637 294 aaKnown RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 KLHL22Q53GT1 634 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 ZNF362Q5T0B9 420 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 B3GNT6Q6ZMB0 384 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 AHSA2Q719I0 299 aa11.38□□□□□ -0.59
CLK3-214ENST00000564096 ABHD12BQ7Z5M8 362 aaPredicted RBP11.38□□□□□ -0.59
CLK3-214ENST00000564096 TUSC5Q8IXB3 177 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms