RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 DCAF13Q9NV06 445 aaKnown RBP11.31□□□□□ -0.6
CTDSPL2-209ENST00000560620 ENPP4Q9Y6X5 453 aa11.31□□□□□ -0.6
CTDSPL2-209ENST00000560620 ARID1AO14497 2285 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 HTR3EA5X5Y0 456 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 EFCAB9A8MZ26 197 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 B2RBV5 119 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 FARS2O95363 451 aaKnown RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 HLA-HP01893 362 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 QDPRP09417 244 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 CECR9P0C854 216 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 BMP4P12644 408 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 HSD17B1P14061 328 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 CBR1P16152 277 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 FUT4P22083 530 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 TTKP33981 857 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 ARR3P36575 388 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 PTDSS1P48651 473 aaKnown RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 ZNF84P51523 738 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 LSM11P83369 360 aaKnown RBP eCLIP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 GSG1Q2KHT4 349 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 TBPL2Q6SJ96 375 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 PRSS57Q6UWY2 283 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 NHLRC1Q6VVB1 395 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 B3GLCTQ6Y288 498 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 MDP1Q86V88 176 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 IGFN1Q86VF2 1251 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 RNF113BQ8IZP6 322 aaKnown RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 FAM86B1Q8N7N1 296 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 TMEM54Q969K7 222 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 MCUR1Q96AQ8 359 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 NSL1Q96IY1 281 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 NSMCE2Q96MF7 247 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 TRAF4Q9BUZ4 470 aaPredicted RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 KATNB1Q9BVA0 655 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 CACNG6Q9BXT2 260 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 GORASP2Q9H8Y8 452 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 NMNAT1Q9HAN9 279 aaPredicted RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 MAN2C1Q9NTJ4 1040 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 CBLN4Q9NTU7 201 aa11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 ZNF701Q9NV72 531 aaPredicted RBP11.3□□□□□ -0.6
CTDSPL2-209ENST00000560620 TEP1Q99973 2627 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 TRAV27A0A087WT01 109 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 A0A087WUU8 490 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 SMAD7O15105 426 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ARPC2O15144 300 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 DHHO43323 396 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ENTPD5O75356 428 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 DIRAS1O95057 198 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 RAB36O95755 333 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 H1F0P07305 194 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 CELA3BP08861 270 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 PGA4P0DJD7 388 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 PGA3P0DJD8 388 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ACADSP16219 412 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ITGA2P17301 1181 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 RHCEP18577 417 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 MAKP20794 623 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 APOBEC3AP31941 199 aaPredicted RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 RPL4P36578 427 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 GPR4P46093 362 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 CTXN1P60606 82 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 NAAAQ02083 359 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 PRKCDQ05655 676 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 CHRNB3Q05901 458 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 CD47Q08722 323 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ZNF544Q6NX49 715 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 PIWIL3Q7Z3Z3 882 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 KRTAP1-3Q8IUG1 177 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 NOXO1Q8NFA2 376 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 OR52J3Q8NH60 311 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 LIPHQ8WWY8 451 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 IGFBPL1Q8WX77 278 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 FBXO17Q96EF6 278 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 PYURFQ96I23 114 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 C18orf12Q96KH6 178 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ZNF347Q96SE7 839 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 BDH2Q9BUT1 245 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 RNF121Q9H920 327 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 KRCC1Q9NPI7 259 aaPredicted RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 NDUFAF4Q9P032 175 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 STX18Q9P2W9 335 aaKnown RBP11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ADAM21Q9UKJ8 722 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 HIF3AQ9Y2N7 669 aa11.29□□□□□ -0.6
CTDSPL2-209ENST00000560620 ALPK2Q86TB3 2170 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 USF3Q68DE3 2245 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 ZNF503-AS2A6NEH8 195 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 TRIM64A6NGJ6 449 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 TRIM64BA6NI03 449 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 H7C1Q1 480 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 OVOL3O00110 214 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 TRMUO75648 421 aaKnown RBP11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 IGKV3-15P01624 115 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 CD8AP01732 235 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 OR8G3PP0DMU2 310 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 RAB1AP62820 205 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 VLDLRP98155 873 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 SPIBQ01892 262 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 RUNX1T1Q06455 604 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 RAB35Q15286 201 aa11.28□□□□□ -0.6
CTDSPL2-209ENST00000560620 TAF11Q15544 211 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms