RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 TMEM5Q9Y2B1 443 aa4.64□□□□□ -1.67
SPG11-220ENST00000559933 IER3IP1Q9Y5U9 82 aa4.64□□□□□ -1.67
SPG11-220ENST00000559933 SPIN1Q9Y657 262 aaPredicted RBP4.64□□□□□ -1.67
SPG11-220ENST00000559933 SPTA1P02549 2419 aa4.64□□□□□ -1.67
SPG11-220ENST00000559933 SHANK1Q9Y566 2161 aa4.64□□□□□ -1.67
SPG11-220ENST00000559933 GCN1Q92616 2671 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 CFAP46Q8IYW2 2715 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNF462Q96JM2 2506 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 IGKV1D-43A0A0B4J1Z2 117 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 A0A1B0GVC2 190 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 AQP7P3A6NL99 342 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 B8ZZF3 427 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 AQP7O14520 342 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 TRAF3IP2O43734 574 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 NDUFB2O95178 105 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 APOL3O95236 402 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 PMS2P2O95744 297 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MT-ATP6P00846 226 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 IGHV3-9P01782 118 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 CRYABP02511 175 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 HIST1H2ABP04908 130 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 GYPBP06028 91 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 STSP08842 583 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 TSPAN19P0C672 248 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 NAT2P11245 290 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 PSKH1P11801 424 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 IFNGR1P15260 489 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 HIST1H1CP16403 213 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 FMO3P31513 532 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 GGT2P36268 569 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 RPL4P36578 427 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 IFNGR2P38484 337 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 UQCRFS1P47985 274 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 GIPRP48546 466 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 BIDP55957 195 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 CARD18P57730 90 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SIRPAP78324 504 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 CDK5Q00535 292 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MYBPC1Q00872 1141 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 PUDPQ08623 228 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MRPL49Q13405 166 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 KRR1Q13601 381 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 CRMP1Q14194 572 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 INAQ16352 499 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ACKR1Q16570 336 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SGCBQ16585 318 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 RFX4Q33E94 735 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ACSF3Q4G176 576 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 ALG10Q5BKT4 473 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 PHYHD1Q5SRE7 291 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNF691Q5VV52 312 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SLX4IPQ5VYV7 408 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 C12orf73Q69YU5 71 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 RTL6Q6ICC9 239 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 RPUSD3Q6P087 351 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 CD300LDQ6UXZ3 194 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ESPNLQ6ZVH7 1005 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SEM1Q6ZVN7 128 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 H1FNTQ75WM6 255 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 FCRLAQ7L513 359 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 HIST3H2AQ7L7L0 130 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 FAM122BQ7Z309 247 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ENTHD1Q8IYW4 607 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 CDK20Q8IZL9 346 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 PARP8Q8N3A8 854 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MARVELD2Q8N4S9 558 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 DHRSXQ8N5I4 330 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 TCEANCQ8N8B7 351 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 C9orf106Q8NAJ2 232 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 OR9Q1Q8NGQ5 310 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 OR4K13Q8NH42 304 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNF519Q8TB69 540 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SMAP2Q8WU79 429 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 SLC25A43Q8WUT9 341 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 FAR1Q8WVX9 515 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 APH1BQ8WW43 257 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNRF4Q8WWF5 429 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SGCDQ92629 289 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 TFAP2CQ92754 450 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 HIST1H2ACQ93077 130 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 DACT3Q96B18 629 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 OTULINQ96BN8 352 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MUS81Q96NY9 551 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 TSSK2Q96PF2 358 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ERMAPQ96PL5 475 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 IL4I1Q96RQ9 567 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNF184Q99676 751 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 PITX2Q99697 317 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 SLX1AQ9BQ83 275 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 VCXQ9H320 206 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 HHATLQ9HCP6 504 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 KRCC1Q9NPI7 259 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 INIPQ9NRY2 104 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ZNF226Q9NYT6 803 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 UBAP1Q9NZ09 502 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 ING1Q9UK53 422 aaPredicted RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 RNF6Q9Y252 685 aa4.63□□□□□ -1.67
SPG11-220ENST00000559933 MRPS18CQ9Y3D5 142 aaKnown RBP4.63□□□□□ -1.67
SPG11-220ENST00000559933 HDGFL3Q9Y3E1 203 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms