RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 NDEL1Q9GZM8 345 aa12.59□□□□□ -0.39
USP3-205ENST00000557884 GLTPQ9NZD2 209 aa12.59□□□□□ -0.39
USP3-205ENST00000557884 ZNF346Q9UL40 294 aaKnown RBP12.59□□□□□ -0.39
USP3-205ENST00000557884 ITPR2Q14571 2701 aa12.59□□□□□ -0.39
USP3-205ENST00000557884 APCP25054 2843 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 CYSRT1A8MQ03 144 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 DEFB108AA8MXU0 73 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 GASTP01350 101 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 IGHMP01871 453 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 CD14P08571 375 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 ACADSP16219 412 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 HOXC12P31275 282 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 GSSP48637 474 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 FXYD6P3P58550 94 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 RPL27P61353 136 aaKnown RBP12.58□□□□□ -0.4
USP3-205ENST00000557884 MYBPC1Q00872 1141 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 TSPAN31Q12999 210 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 DAZAP2Q15038 168 aaPredicted RBP12.58□□□□□ -0.4
USP3-205ENST00000557884 PPA1Q15181 289 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 FREM1Q5H8C1 2179 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 TIMM23BQ5SRD1 257 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 OR7E24Q6IFN5 339 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 ZNF770Q6IQ21 691 aaPredicted RBP12.58□□□□□ -0.4
USP3-205ENST00000557884 SMARCD3Q6STE5 483 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 HDDC2Q7Z4H3 204 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 HS3ST5Q8IZT8 346 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 LINC00471Q8N535 108 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 CLDN22Q8N7P3 220 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 C1orf162Q8NEQ5 155 aaPredicted RBP12.58□□□□□ -0.4
USP3-205ENST00000557884 NOXO1Q8NFA2 376 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 OR1K1Q8NGR3 316 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 MUCL1Q96DR8 90 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 PIK3IP1Q96FE7 263 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 LRR1Q96L50 414 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 SAMD8Q96LT4 415 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 Q96M85 177 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 MUS81Q96NY9 551 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 DNAJB9Q9UBS3 223 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 POFUT2Q9Y2G5 429 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 CSMD1Q96PZ7 3565 aa12.58□□□□□ -0.4
USP3-205ENST00000557884 NOTCH2Q04721 2471 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 HRNRQ86YZ3 2850 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 NPIPB13A6NJU9 1138 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 NPIPB4C9JG80 1138 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 RPL36A-HNRNPH2H7BZ11 118 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 H7C1C5 153 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 CTAG2O75638 210 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 PPP1R3DO95685 299 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 QDPRP09417 244 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 SH3BGRP55822 239 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 KRTAP10-9P60411 292 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 LCN6P62502 163 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TUBA1BP68363 451 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TUBA4AP68366 448 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 GABPB1Q06547 395 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 CD47Q08722 323 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TAF11Q15544 211 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TBRG1Q3YBR2 411 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 LRFN4Q6PJG9 635 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 KLHL24Q6TFL4 600 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 ZNF620Q6ZNG0 422 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TUBA1AQ71U36 451 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 WDR31Q8NA23 367 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 ZNF519Q8TB69 540 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 GIPC3Q8TF64 312 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 PYDC1Q8WXC3 89 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 BCL2L2Q92843 193 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 RASD2Q96D21 266 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 ZNF570Q96NI8 536 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 RAB3IPQ96QF0 476 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 USB1Q9BQ65 265 aaKnown RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 C1QTNF6Q9BXI9 259 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 MRPL13Q9BYD1 178 aaKnown RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 OR52D1Q9H346 318 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 EGLN3Q9H6Z9 239 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 SLC17A5Q9NRA2 495 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 PDP1Q9P0J1 537 aaPredicted RBP12.57□□□□□ -0.4
USP3-205ENST00000557884 GRHPRQ9UBQ7 328 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 AP4S1Q9Y587 144 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 SLC25A15Q9Y619 301 aa12.57□□□□□ -0.4
USP3-205ENST00000557884 TEX13CA0A0J9YWL9 993 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 ARHGEF9O43307 516 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 DEAF1O75398 565 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 SLC2A10O95528 541 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 HRGP04196 525 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 IGFBP1P08833 259 aaPredicted RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 ZNF83P51522 516 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 ACTR3P61158 418 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 FMODQ06828 376 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 RFX4Q33E94 735 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 CLEC12AQ5QGZ9 265 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 ANKRD16Q6P6B7 361 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 SEZ6L2Q6UXD5 910 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 ZNF813Q6ZN06 617 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 DPY19L2P2Q6ZN68 376 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 YTHDF3Q7Z739 585 aaKnown RBP12.56□□□□□ -0.4
USP3-205ENST00000557884 P2RY8Q86VZ1 359 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 ARIH2OSQ8N7S6 290 aa12.56□□□□□ -0.4
USP3-205ENST00000557884 HTRA1Q92743 480 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms