RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FBXL3Q9UKT7 428 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 WIPI2Q9Y4P8 454 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 CORINQ9Y5Q5 1042 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 CACNG2Q9Y698 323 aa15.17■□□□□ 0.02
CLSTN3-214ENST00000542663 IGHV1-69-2A0A0G2JMI3 117 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 LRRN3E7EW58 273 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 PRSS23O95084 383 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 ANP32DO95626 131 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 ARAFP10398 606 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 EPHA3P29320 983 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 PUDPQ08623 228 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 WDR88Q6ZMY6 472 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 KIRREL3Q8IZU9 778 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 OR6S1Q8NH40 331 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 DNAJA4Q8WW22 397 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 CACYBPQ9HB71 228 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 THUMPD1Q9NXG2 353 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 NKIRAS2Q9NYR9 191 aa15.16■□□□□ 0.02
CLSTN3-214ENST00000542663 VWFP04275 2813 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 TMEM247A6NEH6 219 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 CCL2P13500 99 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 LSP1P33241 339 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 KLF3P57682 345 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 DEFA6Q01524 100 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 FOXL1Q12952 345 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 MPP2Q14168 576 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 RGNQ15493 299 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 PCGF3Q3KNV8 242 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 MMEL1Q495T6 779 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 TMEM154Q6P9G4 183 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 ULK3Q6PHR2 472 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 PIWIL3Q7Z3Z3 882 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 SNX32Q86XE0 403 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 SLC30A7Q8NEW0 376 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 BBS10Q8TAM1 723 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 SYNPRQ8TBG9 265 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 C1QTNF5Q9BXJ0 243 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 OR51B6Q9H340 312 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 C7orf69Q9H7B7 122 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 A4GALTQ9NPC4 353 aa15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 MRPL39Q9NYK5 338 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-214ENST00000542663 ZNF726A6NNF4 738 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PLPP3O14495 311 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 TPST1O60507 370 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 SERPINI2O75830 405 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 BMP2P12643 396 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 ETS2P15036 469 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PRKAR1BP31321 381 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 CSNK1A1P48729 337 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 BST1Q10588 318 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 STX3Q13277 289 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PMS2P3Q13401 168 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PDCD4Q53EL6 469 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 FAM91A1Q658Y4 838 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 USP51Q70EK9 711 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PXKQ7Z7A4 578 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 MIER2Q8N344 545 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 SLC22A24Q8N4F4 322 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 SNX33Q8WV41 574 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 TMEM54Q969K7 222 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 LRRC58Q96CX6 371 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 WFDC6Q9BQY6 131 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 ASPNQ9BXN1 380 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 NTN4Q9HB63 628 aa15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 DDX28Q9NUL7 540 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 PRKDCP78527 4128 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-214ENST00000542663 A0A0B4J2E0 115 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 A0A1B0GX12 115 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 CLDN25C9JDP6 229 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 TPST2O60704 377 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SLC22A3O75751 556 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 HOXB9P17482 250 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 AHCYP23526 432 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 GATA3P23771 443 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 RAD52P43351 418 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 BIDP55957 195 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 RBBP4Q09028 425 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 TREML4Q6UXN2 200 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SIGLECL1Q8N7X8 197 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 ZNF519Q8TB69 540 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SLC47A1Q96FL8 570 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 ITCHQ96J02 903 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 C1orf147Q96MC9 270 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SH3GL3Q99963 347 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 TMEM109Q9BVC6 243 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SSU72Q9NP77 194 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 TCF7L2Q9NQB0 619 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 TMEM38BQ9NVV0 291 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SLCO1C1Q9NYB5 712 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 GPR160Q9UJ42 338 aa15.13■□□□□ 0.01
CLSTN3-214ENST00000542663 SLC22A23A1A5C7 686 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 TM9SF1O15321 606 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 SNAP29O95721 258 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 LCKP06239 509 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 OR8G3PP0DMU2 310 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 IDO1P14902 403 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 FPR2P25090 351 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 SELENOVP59797 346 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 VSNL1P62760 191 aa15.12■□□□□ 0.01
CLSTN3-214ENST00000542663 LCN2P80188 198 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms