RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TMEM69Q5SWH9 247 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 STPG1Q5TH74 334 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 HLA-DQA1Q5Y7H0 255 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 PWWP2BQ6NUJ5 590 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 MARCH3Q86UD3 253 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 PRSS58Q8IYP2 241 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 C1orf216Q8TAB5 229 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 FCAMRQ8WWV6 532 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 KLHL15Q96M94 604 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 OR1F2PQ96R84 312 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 AIFM2Q9BRQ8 373 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 NUDT9Q9BW91 350 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 FKRPQ9H9S5 495 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 LMAN1LQ9HAT1 526 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 ZFP64Q9NPA5 681 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 KLHL9Q9P2J3 617 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 FER1L5A0AVI2 2057 aa11.93□□□□□ -0.5
LDLR-203ENST00000535915 SDK1Q7Z5N4 2213 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 GMDSO60547 372 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 KHDRBS3O75525 346 aaKnown RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 MTRF1O75570 445 aaKnown RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 ECDO95905 644 aaPredicted RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 CCR9P51686 369 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 FAM69AQ5T7M9 428 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 GPR139Q6DWJ6 353 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 ZNF767PQ75MW2 155 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 PM20D2Q8IYS1 436 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 ZNF676Q8N7Q3 588 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 DNAAF1Q8NEP3 725 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 CEP76Q8TAP6 659 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 NSMAFQ92636 917 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 MS4A3Q96HJ5 214 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 INTS14Q96SY0 518 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 CHRNA10Q9GZZ6 450 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 COMMD4Q9H0A8 199 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 HRASLSQ9HDD0 168 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 MRPL39Q9NYK5 338 aaKnown RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 KLK11Q9UBX7 282 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 SLC23A1Q9UHI7 598 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 FKBP7Q9Y680 259 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 IGKV3D-11A0A0A0MRZ8 115 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 METTL12A8MUP2 240 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 SLC25A12O75746 678 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 KRT33AO76009 404 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 CALCBP10092 127 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 ELAVL1Q15717 326 aaKnown RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 C14orf28Q4W4Y0 310 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 VWA2Q5GFL6 755 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 C1QL3Q5VWW1 255 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 TMPRSS12Q86WS5 348 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 C17orf82Q86X59 251 aaPredicted RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 SLC25A36Q96CQ1 311 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 MRI1Q9BV20 369 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 PLEKHA1Q9HB21 404 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 COQ3Q9NZJ6 369 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 ING1Q9UK53 422 aaPredicted RBP11.92□□□□□ -0.5
LDLR-203ENST00000535915 FOXJ3Q9UPW0 622 aa11.92□□□□□ -0.5
LDLR-203ENST00000535915 A0A1B0GTQ1 180 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 ANXA2P2A6NMY6 339 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 LMO7DNF2Z398 122 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 XKRYO14609 159 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 TMEM127O75204 238 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 SCO1O75880 301 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 MAS1P04201 325 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 ANXA2P07355 339 aaKnown RBP11.91□□□□□ -0.5
LDLR-203ENST00000535915 RAB40ALP0C0E4 278 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 PTHLHP12272 177 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 ADRA2CP18825 462 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 ALOX5APP20292 161 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 PTH2RP49190 550 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 ART1P52961 327 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 AP3S2P59780 193 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 HNRNPKP61978 463 aaKnown RBP eCLIP11.91□□□□□ -0.54e-6■■■■□ 21.9
LDLR-203ENST00000535915 EBPQ15125 230 aaKnown RBP11.91□□□□□ -0.5
LDLR-203ENST00000535915 NSDHLQ15738 373 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 EEF1A1P5Q5VTE0 462 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 FGD2Q7Z6J4 655 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 C9orf40Q8IXQ3 194 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 OR2G2Q8NGZ5 317 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 RAB40AQ8WXH6 277 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 CCDC74AQ96AQ1 378 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 TBL1XR1Q9BZK7 514 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 FLVCR2Q9UPI3 526 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 TMEM14AQ9Y6G1 99 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 TRBV5-5A0A0J9YX44 114 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 H3BMH7 237 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 GPR171O14626 319 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 PEX14O75381 377 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 PLGP00747 810 aaPredicted RBP11.91□□□□□ -0.5
LDLR-203ENST00000535915 HLA-DQA2P01906 255 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 CDK2P24941 298 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 CENPAP49450 140 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 EFNA3P52797 238 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 OR1D5P58170 312 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 DCAF7P61962 342 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 RPS15P62841 145 aaKnown RBP11.91□□□□□ -0.5
LDLR-203ENST00000535915 HSD11B2P80365 405 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 RPL6Q02878 288 aaKnown RBP11.91□□□□□ -0.5
LDLR-203ENST00000535915 EGR3Q06889 387 aa11.91□□□□□ -0.5
LDLR-203ENST00000535915 PLCXD2Q0VAA5 305 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms