RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CES3Q6UWW8 571 aa5□□□□□ -1.61
CD44-236ENST00000533222 TMEM108Q6UXF1 575 aa5□□□□□ -1.61
CD44-236ENST00000533222 Q6ZPA2 131 aa5□□□□□ -1.61
CD44-236ENST00000533222 DPPA4Q7L190 304 aa5□□□□□ -1.61
CD44-236ENST00000533222 CHMP1BQ7LBR1 199 aa5□□□□□ -1.61
CD44-236ENST00000533222 ZNF720Q7Z2F6 126 aa5□□□□□ -1.61
CD44-236ENST00000533222 AMZ2Q86W34 360 aa5□□□□□ -1.61
CD44-236ENST00000533222 ZNF280BQ86YH2 543 aa5□□□□□ -1.61
CD44-236ENST00000533222 TRAPPC5Q8IUR0 188 aa5□□□□□ -1.61
CD44-236ENST00000533222 SLC30A8Q8IWU4 369 aa5□□□□□ -1.61
CD44-236ENST00000533222 ZC3H3Q8IXZ2 948 aaKnown RBP5□□□□□ -1.61
CD44-236ENST00000533222 FSTL5Q8N475 847 aaPredicted RBP5□□□□□ -1.61
CD44-236ENST00000533222 TMEM156Q8N614 296 aa5□□□□□ -1.61
CD44-236ENST00000533222 AMER3Q8N944 861 aa5□□□□□ -1.61
CD44-236ENST00000533222 OR4E2Q8NGC2 313 aa5□□□□□ -1.61
CD44-236ENST00000533222 OR4K14Q8NGD5 310 aa5□□□□□ -1.61
CD44-236ENST00000533222 OR9Q2Q8NGE9 314 aa5□□□□□ -1.61
CD44-236ENST00000533222 OR14L1PQ8NHC6 308 aa5□□□□□ -1.61
CD44-236ENST00000533222 RDH11Q8TC12 318 aa5□□□□□ -1.61
CD44-236ENST00000533222 GPX8Q8TED1 209 aa5□□□□□ -1.61
CD44-236ENST00000533222 RAD54LQ92698 747 aa5□□□□□ -1.61
CD44-236ENST00000533222 DNASE1L2Q92874 299 aa5□□□□□ -1.61
CD44-236ENST00000533222 HIST1H2BAQ96A08 127 aa5□□□□□ -1.61
CD44-236ENST00000533222 SFRP2Q96HF1 295 aa5□□□□□ -1.61
CD44-236ENST00000533222 MUS81Q96NY9 551 aa5□□□□□ -1.61
CD44-236ENST00000533222 PCDHB18PQ96TA0 734 aa5□□□□□ -1.61
CD44-236ENST00000533222 VPS25Q9BRG1 176 aa5□□□□□ -1.61
CD44-236ENST00000533222 ALKBH7Q9BT30 221 aaPredicted RBP5□□□□□ -1.61
CD44-236ENST00000533222 MED10Q9BTT4 135 aa5□□□□□ -1.61
CD44-236ENST00000533222 PBDC1Q9BVG4 233 aa5□□□□□ -1.61
CD44-236ENST00000533222 DPAGT1Q9H3H5 408 aa5□□□□□ -1.61
CD44-236ENST00000533222 TMEM38AQ9H6F2 299 aa5□□□□□ -1.61
CD44-236ENST00000533222 ZBTB26Q9HCK0 441 aa5□□□□□ -1.61
CD44-236ENST00000533222 HRASLSQ9HDD0 168 aa5□□□□□ -1.61
CD44-236ENST00000533222 ISYNA1Q9NPH2 558 aa5□□□□□ -1.61
CD44-236ENST00000533222 FOXJ2Q9P0K8 574 aa5□□□□□ -1.61
CD44-236ENST00000533222 SIX4Q9UIU6 781 aa5□□□□□ -1.61
CD44-236ENST00000533222 UBE2J1Q9Y385 318 aaPredicted RBP5□□□□□ -1.61
CD44-236ENST00000533222 RHBDD3Q9Y3P4 386 aa5□□□□□ -1.61
CD44-236ENST00000533222 FLVCR1Q9Y5Y0 555 aa5□□□□□ -1.61
CD44-236ENST00000533222 HS3ST3A1Q9Y663 406 aa5□□□□□ -1.61
CD44-236ENST00000533222 DEPDC5O75140 1603 aa5□□□□□ -1.61
CD44-236ENST00000533222 SCN9AQ15858 1988 aa5□□□□□ -1.61
CD44-236ENST00000533222 FER1L4A9Z1Z3 1794 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 LTN1O94822 1766 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 ANKRD31Q8N7Z5 1873 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KIR2DL5BA0A0G2JN68 375 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KIR2DL5BA0A0G2JPC4 375 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 A0A1W2PNV4 684 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 MYADML2A6NDP7 307 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 RNF212BA8MTL3 300 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 ISM1B1AKI9 464 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 F5H6K3 240 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 MAGEB4O15481 346 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 LYRM1O43325 122 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 PLRG1O43660 514 aaKnown RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 PRKAB2O43741 272 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KLRC4O43908 158 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KIAA0513O60268 411 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 SLC19A2O60779 497 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 OR2A4O95047 310 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 SIX3O95343 332 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 AIFM1O95831 613 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 TSPAN13O95857 204 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 CFDP00746 253 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 TBC1D3HP0C7X1 549 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 MGMTP16455 207 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 CHRNB2P17787 502 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 RAB5AP20339 215 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KLRC2P26717 231 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 GCH1P30793 250 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 ICAM3P32942 547 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 AKR1C3P42330 323 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 GPR12P47775 334 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 RGS4P49798 205 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 MMP15P51511 669 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 NOVA1P51513 510 aaKnown RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 CCR8P51685 355 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 ARPP19P56211 112 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 OR2B8PP59922 312 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 TGM3Q08188 693 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 RBBP4Q09028 425 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 HNRNPA0Q13151 305 aaKnown RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 MAMLD1Q13495 774 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 TPBGQ13641 420 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 KIAA0141Q14154 515 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 NSDHLQ15738 373 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 TAZQ16635 292 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 CYP51A1Q16850 503 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 PRTGQ2VWP7 1150 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 PGGHGQ32M88 737 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 SCGB2B2Q4G0G5 96 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 ZNF658BQ4V348 819 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 SPIN4Q56A73 249 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 REEP3Q6NUK4 255 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 MTFR2Q6P444 385 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 Q6ZPB1 254 aaPredicted RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 KCTD9Q7L273 389 aa4.99□□□□□ -1.61
CD44-236ENST00000533222 NUFIP2Q7Z417 695 aaKnown RBP4.99□□□□□ -1.61
CD44-236ENST00000533222 C6orf120Q7Z4R8 191 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms