RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 KCNAB3O43448 404 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 GMFBP60983 142 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 STX4Q12846 297 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 ILF3Q12906 894 aaKnown RBP eCLIP12.94□□□□□ -0.344e-7■□□□□ 9.7
USP48-213ENST00000529637 ATXN7L3Q14CW9 347 aaPredicted RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 USP53Q70EK8 1073 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 OR8S1Q8NH09 359 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 OR4K13Q8NH42 304 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 NANPQ8TBE9 248 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 NKX3-1Q99801 234 aaPredicted RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 ZNF350Q9GZX5 532 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 TDRD6O60522 2096 aaKnown RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 ACOT7O00154 380 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 RDH16O75452 317 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 SLC25A12O75746 678 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 APOC1P02654 83 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 CT62P0C5K7 136 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 PVALBP20472 110 aaPredicted RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 ARFIP1P53367 373 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 C4orf46Q504U0 113 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 LY6G6FQ5SQ64 297 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 TMEM200CA6NKL6 621 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 PRR32B1ATL7 298 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 GPR75O95800 540 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 ZNF3P17036 446 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 ADRA2CP18825 462 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 KCNAB1Q14722 419 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 RBMS2Q15434 407 aaKnown RBP12.94□□□□□ -0.34
USP48-213ENST00000529637 FCRL6Q6DN72 434 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 RAB11FIP2Q7L804 512 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 OR2W3Q7Z3T1 314 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 TMEM17Q86X19 198 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 CSNK1A1LQ8N752 337 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 OR52E2Q8NGJ4 325 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 NT5CQ8TCD5 201 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 HAVCR1Q96D42 359 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 KLF15Q9UIH9 416 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 PCDHB10Q9UN67 800 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 V9GY05 133 aa12.94□□□□□ -0.34
USP48-213ENST00000529637 EIF3GO75821 320 aaKnown RBP eCLIP12.93□□□□□ -0.34
USP48-213ENST00000529637 ZFPL1O95159 310 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 THBS1P07996 1170 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 RPL4P36578 427 aaKnown RBP12.93□□□□□ -0.34
USP48-213ENST00000529637 SOX2P48431 317 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 OR52R1Q8NGF1 315 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 KCNK15Q9H427 330 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 ZNF337Q9Y3M9 751 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 LYPD3O95274 346 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 MGMTP16455 207 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 BDKRB2P30411 391 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 PPP1CAP62136 330 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 ENPP2Q13822 863 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 GXYLT1Q4G148 440 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 JMJD6Q6NYC1 403 aaPredicted RBP12.93□□□□□ -0.34
USP48-213ENST00000529637 UNQ9370/PRO34162Q6UXP9 181 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 SLC16A13Q7RTY0 426 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 OR14A16Q8NHC5 309 aa12.93□□□□□ -0.34
USP48-213ENST00000529637 ZNF346Q9UL40 294 aaKnown RBP12.93□□□□□ -0.34
USP48-213ENST00000529637 TMEM218A2RU14 115 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 PRR19A6NJB7 356 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 RFPL4AA6NLU0 287 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 OR6C76A6NM76 312 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ZNF879B4DU55 563 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 RFPL4AL1F8VTS6 287 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ACAA1P09110 424 aaPredicted RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 C1orf61Q13536 156 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 OOSP2Q86WS3 158 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 OR9A4Q8NGU2 314 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 BMFQ96LC9 184 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 FAM117AQ9C073 453 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 EDARQ9UNE0 448 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 A0A1B0GWA3 101 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 FAM171A2A8MVW0 826 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 SULT1C2O00338 296 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 CRYBA1P05813 215 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 LSSP48449 732 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 EFNB2P52799 333 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 PPIAP62937 165 aaKnown RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 SMAD2Q15796 467 aaKnown RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 ALG10BQ5I7T1 473 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 RPL22L1Q6P5R6 122 aaKnown RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 PARGQ86W56 976 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 GLB1L2Q8IW92 636 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 OR4N2Q8NGD1 307 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ZNF471Q9BX82 626 aaPredicted RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 FBXO4Q9UKT5 387 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 A0A1B0GTH9 108 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 A0A1W2PQF6 199 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 HIST1H1CP16403 213 aaKnown RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 ACTC1P68032 377 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ACTA1P68133 377 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 S100A12P80511 92 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ZNHIT3Q15649 155 aaPredicted RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 NDUFAF6Q330K2 333 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 RBMS3Q6XE24 437 aaKnown RBP12.92□□□□□ -0.34
USP48-213ENST00000529637 BIVMQ86UB2 503 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 ZPLD1Q8TCW7 415 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 SFT2D1Q8WV19 159 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 SEC22AQ96IW7 307 aa12.92□□□□□ -0.34
USP48-213ENST00000529637 CMTM3Q96MX0 182 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms