RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PCGF3Q3KNV8 242 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 SFXN4Q6P4A7 337 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 DPY19L4Q7Z388 723 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 KIAA0907Q7Z7F0 614 aaPredicted RBP10.12□□□□□ -0.79
HDAC6-228ENST00000486227 SIAH3Q8IW03 269 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 OR4M1Q8NGD0 313 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 NPRL2Q8WTW4 380 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 ERVMER34-1Q9H9K5 563 aa10.12□□□□□ -0.79
HDAC6-228ENST00000486227 TDRD15B5MCY1 1934 aaKnown RBP10.12□□□□□ -0.79
HDAC6-228ENST00000486227 WISP3O95389 354 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CD14P08571 375 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CD34P28906 385 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CSNK1A1P48729 337 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 DUSP8Q13202 625 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CDNFQ49AH0 187 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SMUG1Q53HV7 270 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 YIF1BQ5BJH7 314 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 ZNF704Q6ZNC4 412 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 RNF165Q6ZSG1 346 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 MISPQ8IVT2 679 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SMAP2Q8WU79 429 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GHSRQ92847 366 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 S100PBPQ96BU1 408 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CNTNAP3BQ96NU0 1288 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GABRG3Q99928 467 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 TCEAL7Q9BRU2 100 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 ENKD1Q9H0I2 346 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 NGBQ9NPG2 151 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CDHR4A6H8M9 788 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 IDSB3KWA1 339 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 H3BUI4 141 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 PRAMEF4O60810 478 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CSF1P09603 554 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GCH1P30793 250 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 DLSTP36957 453 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GDNFP39905 211 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GLP1RP43220 463 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 EVX1P49640 407 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 FAM209AQ5JX71 171 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CLVS2Q5SYC1 327 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 PRAMEF9Q5VWM5 478 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 OR52N1Q8NH53 320 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 GOT1L1Q8NHS2 421 aaPredicted RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 STT3BQ8TCJ2 826 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 MAFIPQ8WZ33 124 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 TUBAL3A6NHL2 446 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 ACOD1A6NK06 481 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 DSCR3O14972 297 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 IFNA21P01568 189 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 OR2T7P0C7T2 308 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 S100A11P31949 105 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 S100A10P60903 97 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 MELKQ14680 651 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SPIN3Q5JUX0 258 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SLC51BQ86UW2 128 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 CMIPQ8IY22 773 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 FAM26EQ8N5C1 309 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 BOLLQ8N9W6 283 aaKnown RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 OR2T27Q8NH04 317 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SLC2A12Q8TD20 617 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 RASD2Q96D21 266 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 MUCL1Q96DR8 90 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 WDR34Q96EX3 536 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 MED18Q9BUE0 208 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SLC38A1Q9H2H9 487 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 PLEK2Q9NYT0 353 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 TRAV36DV7A0A075B6V5 113 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 TMEM269A0A1B0GVZ9 245 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 DDAH2O95865 285 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 LCATP04180 440 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 HRGP04196 525 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 TPOP07202 933 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 APLNRP35414 380 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 EXOSC2Q13868 293 aaKnown RBP10.11□□□□□ -0.79
HDAC6-228ENST00000486227 KMT5CQ86Y97 462 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 BCORP1Q8N888 145 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SMRP1Q8NCR6 262 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SCARB1Q8WTV0 552 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SPTSSAQ969W0 71 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 FAM46BQ96A09 425 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 SLC6A7Q99884 636 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 ZNF160Q9HCG1 818 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 ISYNA1Q9NPH2 558 aa10.11□□□□□ -0.79
HDAC6-228ENST00000486227 PLXNA1Q9UIW2 1896 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 C4orf47A7E2U8 309 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 SNAPINO95295 136 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 FLI1Q01543 452 aaPredicted RBP10.1□□□□□ -0.79
HDAC6-228ENST00000486227 CAMK2BQ13554 666 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 RHEBQ15382 184 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 RPL22L1Q6P5R6 122 aaKnown RBP10.1□□□□□ -0.79
HDAC6-228ENST00000486227 TEX261Q6UWH6 196 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 APOOLQ6UXV4 268 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 DPY19L2P2Q6ZN68 376 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 HAVCR2Q8TDQ0 301 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 TCTEX1D2Q8WW35 142 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 OR2S2Q9NQN1 319 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 U3KQ87 197 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 V9GY05 133 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 ARID2Q68CP9 1835 aa10.1□□□□□ -0.79
HDAC6-228ENST00000486227 NINQ8N4C6 2090 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms