RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TMEM64Q6YI46 380 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR4K14Q8NGD5 310 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PFN4Q8NHR9 129 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 SNX33Q8WV41 574 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR7D2Q96RA2 312 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 RIOK2Q9BVS4 552 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 RHBGQ9H310 441 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PPP1R14DQ9NXH3 145 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 NUMA1Q14980 2115 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 SMAD9O15198 467 aaKnown RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR2T7P0C7T2 308 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 ADRA2CP18825 462 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PMELP40967 661 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PRLHRP49683 370 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR7A5Q15622 319 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 WDR88Q6ZMY6 472 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 DPPA4Q7L190 304 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 NDUFAF7Q7L592 441 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 TMED4Q7Z7H5 227 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PAQR4Q8N4S7 273 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 C12orf76Q8N812 135 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 INO80EQ8NBZ0 244 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR10R2Q8NGX6 335 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 OR2T27Q8NH04 317 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 RGP1Q92546 391 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 ZMYND19Q96E35 227 aaPredicted RBP13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 TMEM68Q96MH6 324 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 HSPA12BQ96MM6 686 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 KLHL31Q9H511 634 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 RHOFQ9HBH0 211 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 PCDHGA1Q9Y5H4 931 aa13.37□□□□□ -0.27
VPS9D1-201ENST00000389386 GXYLT2A0PJZ3 443 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 DBX1A6NMT0 343 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 NPIPB9F8W1W9 429 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CCSO14618 274 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 FCMRO60667 390 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 HPGDP15428 266 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 AVPR2P30518 371 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 COL4A3Q01955 1670 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 MDC1Q14676 2089 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 TMEM244Q5VVB8 128 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 STEAP1BQ6NZ63 245 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 STAC2Q6ZMT1 411 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 SFTPA1Q8IWL2 248 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CLEC1AQ8NC01 280 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 OR13C2Q8NGS9 318 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 OR8S1Q8NH09 359 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 TIFAQ96CG3 184 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 TEX101Q9BY14 249 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 MYOZ1Q9NP98 299 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CLDND1Q9NY35 253 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 UPB1Q9UBR1 384 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 FBXO4Q9UKT5 387 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 ZNF281Q9Y2X9 895 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 MEIS3P1A6NDR6 274 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 IDSB3KWA1 339 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 AP4M1O00189 453 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 SLC34A2O95436 690 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CD63P08962 238 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 SFTA3P0C7M3 94 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 TPT1P13693 172 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CEBPBP17676 345 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CPT2P23786 658 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 NDUFS1P28331 727 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 VIPR2P41587 438 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 RIDAP52758 137 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 RAB2AP61019 212 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 LTBQ06643 244 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 DHRS2Q13268 280 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 ELAVL1Q15717 326 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 BAP18Q8IXM2 172 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 C2orf73Q8N5S3 287 aaPredicted RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 OR1J2Q8NGS2 313 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 OR4C6Q8NH72 309 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 SFXN5Q8TD22 340 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 CXorf40AQ8TE69 158 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 TMED6Q8WW62 240 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 OTUB2Q96DC9 234 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 ICAM5Q9UMF0 924 aa13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 MTCL1Q9Y4B5 1905 aaKnown RBP13.36□□□□□ -0.27
VPS9D1-201ENST00000389386 C9orf170A2RU37 121 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 MCIDASD6RGH6 385 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 STMND1H3BQB6 276 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 EMC8O43402 210 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 KCNAB3O43448 404 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 CD34P28906 385 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 ACTR1BP42025 376 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 CAV2P51636 162 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 GPM6BQ13491 265 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 COL9A2Q14055 689 aaPredicted RBP13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 PRAMEF14Q5SWL7 426 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 TMEM220Q6QAJ8 160 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 UBE3DQ7Z6J8 389 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 NUDT13Q86X67 352 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 OR2L13Q8N349 312 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 C14orf144Q96I85 54 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 OPA3Q9H6K4 179 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 STEAP1Q9UHE8 339 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 SIGLEC7Q9Y286 467 aa13.35□□□□□ -0.27
VPS9D1-201ENST00000389386 RNASEK-C17orf49H0YIS7 233 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms