RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FOXK2Q01167 660 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 EIF3IQ13347 325 aaKnown RBP11.62□□□□□ -0.55
CLK3-201ENST00000345005 FHL1Q13642 323 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CSRP2Q16527 193 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 IDNKQ5T6J7 187 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 SLC22A10Q63ZE4 541 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CXXC5Q7LFL8 322 aaKnown RBP11.62□□□□□ -0.55
CLK3-201ENST00000345005 FGD2Q7Z6J4 655 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CPOQ8IVL8 374 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 M1APQ8TC57 530 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 GPR119Q8TDV5 335 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 SPRYD4Q8WW59 207 aaPredicted RBP11.62□□□□□ -0.55
CLK3-201ENST00000345005 PHF21AQ96BD5 680 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 IMMP1LQ96LU5 166 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 SECISBP2Q96T21 854 aaKnown RBP11.62□□□□□ -0.55
CLK3-201ENST00000345005 RNF32Q9H0A6 362 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CMC2Q9NRP2 79 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 HS3ST3B1Q9Y662 390 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 EML6Q6ZMW3 1958 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 KNTC1P50748 2209 aa11.62□□□□□ -0.55
CLK3-201ENST00000345005 CFAP54Q96N23 3096 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 A0A0A6YYJ9 748 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.61□□□□□ -0.55
CLK3-201ENST00000345005 RIIAD1A6NNX1 92 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 ZNF354AO60765 605 aaPredicted RBP11.61□□□□□ -0.55
CLK3-201ENST00000345005 LRP3O75074 770 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 OR2J2O76002 312 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 SLC2A10O95528 541 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 SERPINA3P01011 423 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 IFNGP01579 166 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 PDGFAP04085 211 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 COX6A1P12074 109 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 MST1P26927 711 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 NTRK2Q16620 822 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 TMEM164Q5U3C3 297 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 FAM69BQ5VUD6 431 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 NDUFAF7Q7L592 441 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 MS4A15Q8N5U1 240 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 ZNF680Q8NEM1 530 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 PRRX2Q99811 253 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 OR51J1Q9H342 316 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 GHITMQ9H3K2 345 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 GALNT9Q9HCQ5 603 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 HINT3Q9NQE9 182 aaKnown RBP11.61□□□□□ -0.55
CLK3-201ENST00000345005 WDR70Q9NW82 654 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 SLC23A1Q9UHI7 598 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 SDK2Q58EX2 2172 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 CPAMD8Q8IZJ3 1885 aa11.61□□□□□ -0.55
CLK3-201ENST00000345005 FBXO45P0C2W1 286 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ENPP1P22413 925 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 NOS3P29474 1203 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 UQCRC1P31930 480 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 POLR2HP52434 150 aaKnown RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 SUMO3P55854 103 aaPredicted RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 CAV3P56539 151 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PRPS1P60891 318 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ZNF74Q16587 644 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 CLLU1Q5K131 121 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 FAM205BPQ63HN1 556 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ARHGAP11AQ6P4F7 1023 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 LYPD8Q6UX82 237 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 DPY19L2P2Q6ZN68 376 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 TMEM91Q6ZNR0 172 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 C10orf53Q8N6V4 93 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 OR4M1Q8NGD0 313 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 RNF138Q8WVD3 245 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 TMEM234Q8WY98 164 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ZNF649Q9BS31 505 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MFRPQ9BY79 579 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 SPRY4Q9C004 299 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MMP25Q9NPA2 562 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 NANSQ9NR45 359 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 SDHAF3Q9NRP4 125 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 RYDENQ9NUL5 291 aaKnown RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 TAS2R10Q9NYW0 307 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ABRACLQ9P1F3 81 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MALT1Q9UDY8 824 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MGAT4AQ9UM21 535 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ANKUB1A6NFN9 424 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PRR23D1E9PI22 279 aaPredicted RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 J3QRE1 110 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 ADAM10O14672 748 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 GMFGO60234 142 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PRAF2O60831 178 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 UBL3O95164 117 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PPP1R3DO95685 299 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MT-ND5P03915 603 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PRR23D2P0DMB1 279 aaPredicted RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 ZNF3P17036 446 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 TCN2P20062 427 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MSX1P28360 303 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MMP15P51511 669 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 RPS4XP62701 263 aaKnown RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 EGR4Q05215 589 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 DYRK1AQ13627 763 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 TOMM34Q15785 309 aaPredicted RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 GRK1Q15835 563 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 PLBD1Q6P4A8 553 aa11.6□□□□□ -0.55
CLK3-201ENST00000345005 MEPCEQ7L2J0 689 aaKnown RBP11.6□□□□□ -0.55
CLK3-201ENST00000345005 GRINAQ7Z429 371 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms