RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 INIPQ9NRY2 104 aa12.47□□□□□ -0.41
SHKBP1-217ENST00000598558 NPAP1Q9NZP6 1156 aa12.47□□□□□ -0.41
SHKBP1-217ENST00000598558 ZNF346Q9UL40 294 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-217ENST00000598558 SIGLEC7Q9Y286 467 aa12.47□□□□□ -0.41
SHKBP1-217ENST00000598558 DHRS12A0PJE2 317 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 CIB4A0PJX0 185 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR5H1A6NKK0 313 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 ZNF726A6NNF4 738 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 MCIDASD6RGH6 385 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 RPL36A-HNRNPH2H7BZ11 118 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 TNFRSF11BO00300 401 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 TRMUO75648 421 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 BCL10O95999 233 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 PLAUP00749 431 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 RAP2AP10114 183 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 PPP3CBP16298 524 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 RASSF2P50749 326 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 IST1P53990 364 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 SMIM11AP58511 58 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 CTXN1P60606 82 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 CCNIQ14094 377 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 CEACAM16Q2WEN9 425 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 ZBED5Q49AG3 693 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 FAM98BQ52LJ0 330 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 ALG10Q5BKT4 473 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR2T5Q6IEZ7 315 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 ZNF770Q6IQ21 691 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 PGBD2Q6P3X8 592 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 RRM2BQ7LG56 351 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 PAPD5Q8NDF8 572 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR9Q2Q8NGE9 314 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR1K1Q8NGR3 316 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR2T29Q8NH02 315 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 OR52N5Q8NH56 324 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 ASB10Q8WXI3 467 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 BCL2L2Q92843 193 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 LRR1Q96L50 414 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 MRPL13Q9BYD1 178 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 CRLF2Q9HC73 371 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 SLC17A5Q9NRA2 495 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 IL20RAQ9UHF4 553 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 AURKCQ9UQB9 309 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 SLC25A15Q9Y619 301 aa12.46□□□□□ -0.41
SHKBP1-217ENST00000598558 A0A096LPE4 126 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 IGKV1D-43A0A0B4J1Z2 117 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 A0A1W2PPZ6 126 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF503-AS2A6NEH8 195 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 DPRXA6NFQ7 191 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF587BE7ETH6 402 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 CASKO14936 926 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 KRT33AO76009 404 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 SEC14L2O76054 403 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 PGA4P0DJD7 388 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 PGA3P0DJD8 388 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 GSSP48637 474 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 SLC9A3P48764 834 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 ERVK-25P63136 954 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 HIST3H3Q16695 136 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 TIMM23BQ5SRD1 257 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 CCDC121Q6ZUS5 278 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 CDC20BQ86Y33 519 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 CDK20Q8IZL9 346 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 GPR137CQ8N3F9 429 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 CLDN22Q8N7P3 220 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 HSD17B8Q92506 261 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 HDAC2Q92769 488 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 NMD3Q96D46 503 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 PIK3IP1Q96FE7 263 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 SLC25A44Q96H78 314 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 BOD1Q96IK1 185 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 RSRC1Q96IZ7 334 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 LURAP1Q96LR2 239 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 TSPAN32Q96QS1 320 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 C1QTNF6Q9BXI9 259 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 TRIM15Q9C019 465 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 TXNIPQ9H3M7 391 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 TMEM5Q9Y2B1 443 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 ADAM18Q9Y3Q7 739 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 U3KQV3 271 aa12.45□□□□□ -0.42
SHKBP1-217ENST00000598558 ANKHD1Q8IWZ3 2542 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 A0A1W2PRG6 482 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 UNC119BA6NIH7 251 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 OR6C65A6NJZ3 312 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 IMPA2O14732 288 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 OR10H3O60404 316 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 FKBP6O75344 327 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 KRT36O76013 467 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 GASTP01350 101 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 ACADSP16219 412 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 CSNK1A1P48729 337 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 TUBA1BP68363 451 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 TUBA4AP68366 448 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 MYBPC1Q00872 1141 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 TOP3AQ13472 1001 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 PPA1Q15181 289 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 TBRG1Q3YBR2 411 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 HMBOX1Q6NT76 420 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 C1orf94Q6P1W5 598 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 TUBA1AQ71U36 451 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms