RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TIPRLO75663 272 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 CST1P01037 141 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 EPXP11678 715 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 CDH2P19022 906 aaPredicted RBP17.19■□□□□ 0.34
CLN3-225ENST00000566824 IL32P24001 234 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 SLC9A3P48764 834 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 GABRA6Q16445 453 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 ALG10Q5BKT4 473 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 ARMC4Q5T2S8 1044 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 OR6X1Q8NH79 312 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 ASB10Q8WXI3 467 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 DACH2Q96NX9 599 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 MED18Q9BUE0 208 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 GPR35Q9HC97 309 aa17.19■□□□□ 0.34
CLN3-225ENST00000566824 SAMHD1Q9Y3Z3 626 aaKnown RBP17.19■□□□□ 0.34
CLN3-225ENST00000566824 A0A1W2PR80 420 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 ZNF726A6NNF4 738 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 POLQO75417 2590 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 GASTP01350 101 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 GSSP48637 474 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 KRTAP10-9P60411 292 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 CTXN1P60606 82 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 ROR2Q01974 943 aaKnown RBP17.18■□□□□ 0.34
CLN3-225ENST00000566824 TOP3AQ13472 1001 aaPredicted RBP17.18■□□□□ 0.34
CLN3-225ENST00000566824 TAB1Q15750 504 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 ALKBH2Q6NS38 261 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 C1orf94Q6P1W5 598 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 SEZ6L2Q6UXD5 910 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 STEAP2Q8NFT2 490 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 TMEM54Q969K7 222 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 TSPAN32Q96QS1 320 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 REEP1Q9H902 201 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 TAS2R16Q9NYV7 291 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 NDRG3Q9UGV2 375 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 ZNF346Q9UL40 294 aaKnown RBP17.18■□□□□ 0.34
CLN3-225ENST00000566824 ADAM18Q9Y3Q7 739 aa17.18■□□□□ 0.34
CLN3-225ENST00000566824 A0A1W2PRG6 482 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 CIB2O75838 187 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 KRT33AO76009 404 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 CCNB2O95067 398 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 BCL10O95999 233 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 MPGP29372 298 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 ERVK-25P63136 954 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 KPNB1Q14974 876 aaKnown RBP17.17■□□□□ 0.34
CLN3-225ENST00000566824 STK11Q15831 433 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 LRFN4Q6PJG9 635 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 WFDC8Q8IUA0 241 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 HS3ST5Q8IZT8 346 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 GPR137CQ8N3F9 429 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 CLDN22Q8N7P3 220 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 WDR31Q8NA23 367 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 HDHD5Q9BXW7 423 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 TXNIPQ9H3M7 391 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 NELFAQ9H3P2 528 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 NTN4Q9HB63 628 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 CRLF2Q9HC73 371 aa17.17■□□□□ 0.34
CLN3-225ENST00000566824 CIB4A0PJX0 185 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 ZNF587BE7ETH6 402 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 RPL36A-HNRNPH2H7BZ11 118 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 AKAP8O43823 692 aaKnown RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 TRMUO75648 421 aaKnown RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 SEC14L2O76054 403 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 IGFBP1P08833 259 aaPredicted RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 PGA4P0DJD7 388 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 PGA3P0DJD8 388 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 FPR3P25089 353 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 PEX19P40855 299 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 ARF1P84077 181 aaKnown RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 MYBPC1Q00872 1141 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 TLE4Q04727 773 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 DAZAP2Q15038 168 aaPredicted RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 MICAQ29983 383 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 CEACAM16Q2WEN9 425 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 HIKESHIQ53FT3 197 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 SYT14Q8NB59 555 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 OR6N1Q8NGY5 312 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 GNPDA2Q8TDQ7 276 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 HDAC2Q92769 488 aaKnown RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 SLC25A44Q96H78 314 aaPredicted RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 MUS81Q96NY9 551 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 KATNB1Q9BVA0 655 aa17.16■□□□□ 0.34
CLN3-225ENST00000566824 MRPL13Q9BYD1 178 aaKnown RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 MAGED1Q9Y5V3 778 aaPredicted RBP17.16■□□□□ 0.34
CLN3-225ENST00000566824 CADP27708 2225 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 OR6C65A6NJZ3 312 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 OR5H1A6NKK0 313 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 A6NNC1 897 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 DEFB108AA8MXU0 73 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 IGHMP01871 453 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 LOXP28300 417 aaPredicted RBP17.15■□□□□ 0.34
CLN3-225ENST00000566824 CSNK1A1P48729 337 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 AQP11Q8NBQ7 271 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 OR1K1Q8NGR3 316 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 ZNF519Q8TB69 540 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 HTRA1Q92743 480 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 BCL2L2Q92843 193 aaPredicted RBP17.15■□□□□ 0.34
CLN3-225ENST00000566824 GTPBP3Q969Y2 492 aaKnown RBP17.15■□□□□ 0.34
CLN3-225ENST00000566824 DUS3LQ96G46 650 aaKnown RBP17.15■□□□□ 0.34
CLN3-225ENST00000566824 LRR1Q96L50 414 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 ADAD1Q96M93 576 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms