RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 NPIPB13A6NJU9 1138 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SAC3D1A6NKF1 404 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPB5A8MRT5 1133 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FAM157AC9JC47 383 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPB4C9JG80 1138 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PDLIM1O00151 329 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF195O14628 629 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 EIF3HO15372 352 aaKnown RBP eCLIP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 KIAA0513O60268 411 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CYTIPO60759 359 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 LYZL6O75951 148 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 NKX2-2O95096 273 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 KLHL2O95198 593 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 OXSR1O95747 527 aaPredicted RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 RPS17P08708 135 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 IGFBP1P08833 259 aaPredicted RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 TACSTD2P09758 323 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GFAPP14136 432 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GGT1P19440 569 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GIFP27352 417 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ELK4P28324 431 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 LCN1P31025 176 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 IL2RGP31785 369 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GABRA3P34903 492 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 HSD17B3P37058 310 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 EIF1P41567 113 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CCNG1P51959 295 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PSMD4P55036 377 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 VAMP2P63027 116 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GUCY2DQ02846 1103 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CHRNB3Q05901 458 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SLC18A2Q05940 514 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SPOCK1Q08629 439 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ALKBH1Q13686 389 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GGTLC2Q14390 218 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PDK3Q15120 406 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CD226Q15762 336 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GABRA6Q16445 453 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 DECR1Q16698 335 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FAM83EQ2M2I3 478 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GLE1Q53GS7 698 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SLC25A53Q5H9E4 307 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 TECRLQ5HYJ1 363 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 LIPMQ5VYY2 423 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FAM71E1Q6IPT2 247 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 RAPH1Q70E73 1250 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FCRLAQ7L513 359 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 RNF144BQ7Z419 303 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CCDC91Q7Z6B0 441 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 NR2C2APQ86WQ0 139 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ZBED8Q8IZ13 594 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FAM9CQ8IZT9 166 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SPC24Q8NBT2 197 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 C16orf78Q8WTQ4 265 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PYROXD1Q8WU10 500 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 FAM216AQ8WUB2 273 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CDKL2Q92772 493 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 CPNE4Q96A23 557 aaPredicted RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 EXOSC8Q96B26 276 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 MUCL1Q96DR8 90 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ELP4Q96EB1 424 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 RNF125Q96EQ8 232 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 RNFT2Q96EX2 444 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 AMDHD1Q96NU7 426 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 INPP5KQ9BT40 448 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 TBL1XR1Q9BZK7 514 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SHCBP1LQ9BZQ2 653 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GLIPR2Q9H4G4 154 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 ELOVL6Q9H5J4 265 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 TMEM185BQ9H7F4 350 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 HHATLQ9HCP6 504 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 Q9N2J8 555 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 TIGARQ9NQ88 270 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 VPS29Q9UBQ0 182 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 MRTO4Q9UKD2 239 aaKnown RBP3.06□□□□□ -1.92
LIMA1-206ENST00000550611 GRID1Q9ULK0 1009 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 SNX12Q9UMY4 172 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PPP2R2CQ9Y2T4 447 aa3.06□□□□□ -1.92
LIMA1-206ENST00000550611 PLCE1Q9P212 2302 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 IGKV3D-15A0A087WSY6 115 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 UQCRHLA0A096LP55 91 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 A0A096LPK6 155 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 IGHV3-15A0A0B4J1V0 119 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 LRP5LA4QPB2 252 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SH2D7A6NKC9 451 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF716A6NP11 495 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 C9JVG2 144 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 H0YHG0 523 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 MANBAO00462 879 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GMFGO60234 142 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PCDH7O60245 1069 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 KCNK2O95069 426 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 STAMBPO95630 424 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 OTCP00480 354 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PRPS2P11908 318 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ME2P23368 584 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PRPH2P23942 346 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TACR3P29371 465 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TYK2P29597 1187 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms