RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	SLC25A44	Q96H78	314 aa	Predicted RBP	18.32	■□□□□ 0.52
CD44-222	ENST00000526025	TXNDC15	Q96J42	360 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	SPOCK3	Q9BQ16	436 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	PDP1	Q9P0J1	537 aa	Predicted RBP	18.32	■□□□□ 0.52
CD44-222	ENST00000526025	UPB1	Q9UBR1	384 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025	ADGRG4	Q8IZF6	3080 aa		18.32	■□□□□ 0.52
CD44-222	ENST00000526025		A1L4Q6	167 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	C16orf97	H3BN30	126 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	RPL36A-HNRNPH2	H7BZ11	118 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	ENTPD5	O75356	428 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	ANXA8	P13928	327 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	UGT2B10	P36537	528 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	BID	P55957	195 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	FXYD6P3	P58550	94 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	CTXN1	P60606	82 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	ITGAD	Q13349	1161 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	RFX4	Q33E94	735 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	SFRP5	Q5T4F7	317 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	C1QTNF12	Q5T7M4	302 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	DPY19L2P2	Q6ZN68	376 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	RASSF6	Q6ZTQ3	369 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	HIPK1	Q86Z02	1210 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	DMRTC2	Q8IXT2	367 aa	Predicted RBP	18.31	■□□□□ 0.52
CD44-222	ENST00000526025	UBE2J2	Q8N2K1	259 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	SVOPL	Q8N434	492 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	LRTOMT	Q8WZ04	291 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	BOD1	Q96IK1	185 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	FEV	Q99581	238 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	NRIP3	Q9NQ35	241 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	TAS2R16	Q9NYV7	291 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	IL20	Q9NYY1	176 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	PLEKHB1	Q9UF11	243 aa	Predicted RBP	18.31	■□□□□ 0.52
CD44-222	ENST00000526025	CDH10	Q9Y6N8	788 aa		18.31	■□□□□ 0.52
CD44-222	ENST00000526025	PKDREJ	Q9NTG1	2253 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025		A6NIZ1	184 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	MCIDAS	D6RGH6	385 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF587B	E7ETH6	402 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	C19orf84	I3L1E1	186 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	SERPINI2	O75830	405 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	IGHG1	P01857	330 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	PPP3CB	P16298	524 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	GRN	P28799	593 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	MPG	P29372	298 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	SLC6A6	P31641	620 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	RPL4	P36578	427 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	RAP1B	P61224	184 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	RPL27	P61353	136 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	RAP1A	P62834	184 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	FAM27E3	Q08E93	113 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	GPR139	Q6DWJ6	353 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	SSX8	Q7RTT4	187 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	FAM122B	Q7Z309	247 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	C1orf162	Q8NEQ5	155 aa	Predicted RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	STEAP2	Q8NFT2	490 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF566	Q969W8	418 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	OSBPL10	Q9BXB5	764 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	POLDIP3	Q9BY77	421 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	MRPL13	Q9BYD1	178 aa	Known RBP	18.3	■□□□□ 0.52
CD44-222	ENST00000526025	GABARAPL1	Q9H0R8	117 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	OR52D1	Q9H346	318 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	S100A14	Q9HCY8	104 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	B3GAT2	Q9NPZ5	323 aa		18.3	■□□□□ 0.52
CD44-222	ENST00000526025	ERICH4	A6NGS2	130 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	UPK3A	O75631	287 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	IGHV3-9	P01782	118 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	PGA4	P0DJD7	388 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	PGA3	P0DJD8	388 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	NR2C1	P13056	603 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	ACADS	P16219	412 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	IGHV1-2	P23083	117 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	CCKAR	P32238	428 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	SH3BGR	P55822	239 aa	Predicted RBP	18.29	■□□□□ 0.52
CD44-222	ENST00000526025	TGFBR3	Q03167	851 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	FAP	Q12884	760 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	CAMK2D	Q13557	499 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	HIST3H3	Q16695	136 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	HMBOX1	Q6NT76	420 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	THSD4	Q6ZMP0	1018 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	CXorf67	Q86X51	503 aa	Predicted RBP	18.29	■□□□□ 0.52
CD44-222	ENST00000526025	GPR137C	Q8N3F9	429 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF433	Q8N7K0	673 aa	Predicted RBP	18.29	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF519	Q8TB69	540 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	FNDC8	Q8TC99	324 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	KISS1R	Q969F8	398 aa	Predicted RBP	18.29	■□□□□ 0.52
CD44-222	ENST00000526025	TMEM54	Q969K7	222 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	ALG12	Q9BV10	488 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	EMC6	Q9BV81	110 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	KATNB1	Q9BVA0	655 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF556	Q9HAH1	456 aa		18.29	■□□□□ 0.52
CD44-222	ENST00000526025	UTP20	O75691	2785 aa	Known RBP	18.29	■□□□□ 0.52
CD44-222	ENST00000526025	IMPA2	O14732	288 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ARPC3	O15145	178 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	AHCYL1	O43865	530 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	KRT33A	O76009	404 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	TXNDC12	O95881	172 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ITGA5	P08648	1049 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	CSNK1A1	P48729	337 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	RPS6KA3	P51812	740 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF133	P52736	654 aa	Predicted RBP	18.28	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms