RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 IL1BP01584 269 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 PPIAL4FP0DN26 164 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 TCN1P20061 433 aaPredicted RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 CNR1P21554 472 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 RORAP35398 523 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 FDFT1P37268 417 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 EPS15P42566 896 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 CXCL5P42830 114 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 RPS9P46781 194 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 GYG1P46976 350 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 TFPI2P48307 235 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 HNMTP50135 292 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 MRPL28Q13084 256 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 SGCAQ16586 387 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 GUCA2BQ16661 112 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 IMMTQ16891 758 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 RSPO1Q2MKA7 263 aaPredicted RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 DEFB116Q30KQ4 102 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 LRRC31Q6UY01 552 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 EFL1Q7Z2Z2 1120 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 PCP2Q8IVA1 136 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 LRRC75A-AS1Q8N1F1 130 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 ZADH2Q8N4Q0 377 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 STARD8Q92502 1023 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 EXOSC8Q96B26 276 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 DNAJC19Q96DA6 116 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 AURKBQ96GD4 344 aaPredicted RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 IFT74Q96LB3 600 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 TCEANC2Q96MN5 208 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 MS4A4EQ96PG1 132 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 PSKH2Q96QS6 385 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 TAAR1Q96RJ0 339 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 CNN2Q99439 309 aaKnown RBP2.06□□□□□ -2.08
VPS50-219ENST00000495039 SORT1Q99523 831 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 MFFQ9GZY8 342 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 DNTTIP1Q9H147 329 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 NMRAL1Q9HBL8 299 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 TM9SF3Q9HD45 589 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 ADAP2Q9NPF8 381 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 CTPS2Q9NRF8 586 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 PIGLQ9Y2B2 252 aa2.06□□□□□ -2.08
VPS50-219ENST00000495039 IGLV3-22A0A075B6J6 115 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 CLRN2A0PK11 232 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 DLGAP1O14490 977 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 OR7A10O76100 309 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 ERLIN2O94905 339 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 TSPAN12O95859 305 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 FGF1P05230 155 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 UBTFL1P0CB47 393 aaPredicted RBP2.05□□□□□ -2.08
VPS50-219ENST00000495039 GPR6P46095 362 aaPredicted RBP2.05□□□□□ -2.08
VPS50-219ENST00000495039 NPBWR2P48146 333 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 UBE2AP49459 152 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 UBE2HP62256 183 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 HMGCS1Q01581 520 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 IL24Q13007 206 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 AQP6Q13520 282 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 OR2A2Q6IF42 318 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 TRIM40Q6P9F5 258 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 UQCC3Q6UW78 93 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 KDM7AQ6ZMT4 941 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 Q8N976 141 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 BHLHE23Q8NDY6 225 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 OR1L4Q8NGR5 311 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 FAM110BQ8TC76 370 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 ACTRT1Q8TDG2 376 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 SDR42E1Q8WUS8 393 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 GEMIN6Q8WXD5 167 aaKnown RBP2.05□□□□□ -2.08
VPS50-219ENST00000495039 STMN2Q93045 179 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 HSFY1Q96LI6 401 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 OR8B4Q96RC9 309 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 PANX2Q96RD6 677 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 FMO2Q99518 471 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 CRACR2AQ9BSW2 395 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 TRIM62Q9BVG3 475 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 FAIM2Q9BWQ8 316 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 LRRC40Q9H9A6 602 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 SGK2Q9HBY8 427 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 SLCO1B3Q9NPD5 702 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 LHX9Q9NQ69 397 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 PACSIN2Q9UNF0 486 aaPredicted RBP2.05□□□□□ -2.08
VPS50-219ENST00000495039 NPTNQ9Y639 398 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 NFASCO94856 1347 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 MSH6P52701 1360 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
VPS50-219ENST00000495039 IGLV4-60A0A075B6I1 120 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 ANGPTL7O43827 346 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 AIREO43918 545 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 B4GALT2O60909 372 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 UPK3AO75631 287 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 IGLV2-23P01705 113 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 IGHV2-5P01817 119 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 ZDHHC11BP0C7U3 371 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 SMIM10L1P0DMW3 83 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 IGHV3-43DP0DP04 118 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 PMELP40967 661 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 ZNF136P52737 540 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 ARFIP1P53367 373 aa2.04□□□□□ -2.08
VPS50-219ENST00000495039 SUB1P53999 127 aaKnown RBP eCLIP2.04□□□□□ -2.08
VPS50-219ENST00000495039 FGF8P55075 233 aaPredicted RBP2.04□□□□□ -2.08
VPS50-219ENST00000495039 ACTR1AP61163 376 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms