RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 HMBOX1Q6NT76 420 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 WFDC8Q8IUA0 241 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 WDFY1Q8IWB7 410 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 CDK20Q8IZL9 346 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 WDR31Q8NA23 367 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 LRRC75AQ8NAA5 344 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 OR4K5Q8NGD3 323 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 OR1K1Q8NGR3 316 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 TMEM54Q969K7 222 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 SLC25A44Q96H78 314 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-208ENST00000484246 EMC6Q9BV81 110 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 NELFAQ9H3P2 528 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 GPR35Q9HC97 309 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 MOV10Q9HCE1 1003 aaKnown RBP13.94□□□□□ -0.18
UPF3A-208ENST00000484246 KRCC1Q9NPI7 259 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-208ENST00000484246 B3GAT2Q9NPZ5 323 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 INIPQ9NRY2 104 aa13.94□□□□□ -0.18
UPF3A-208ENST00000484246 ITPR2Q14571 2701 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ARPC4-TTLL3A0A0A6YYG9 625 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 A0A1W2PRG6 482 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 BLOC1S5-TXNDC5H3BN57 136 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 CDC42EP2O14613 210 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 KRT36O76013 467 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 GADD45GO95257 159 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 STAMBPO95630 424 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 PGA4P0DJD7 388 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 PGA3P0DJD8 388 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 SAGP10523 405 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-208ENST00000484246 CSNK1A1P48729 337 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ZNF133P52736 654 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-208ENST00000484246 BIDP55957 195 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 PRPS1P60891 318 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 SPIBQ01892 262 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 FAM98BQ52LJ0 330 aaKnown RBP13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ALG10Q5BKT4 473 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 NCMAPQ5T1S8 102 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ARMC4Q5T2S8 1044 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 FAM205BPQ63HN1 556 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ANKRD16Q6P6B7 361 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 TBPL2Q6SJ96 375 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 RRM2BQ7LG56 351 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 CDH24Q86UP0 819 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 MOSPD2Q8NHP6 518 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 ASB10Q8WXI3 467 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 BCL2L2Q92843 193 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-208ENST00000484246 NINJ1Q92982 152 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 PIK3IP1Q96FE7 263 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 MRPL13Q9BYD1 178 aaKnown RBP13.93□□□□□ -0.18
UPF3A-208ENST00000484246 NPAP1Q9NZP6 1156 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 MPDZO75970 2070 aa13.93□□□□□ -0.18
UPF3A-208ENST00000484246 DCHS2Q6V1P9 2916 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ZNF99A8MXY4 864 aaPredicted RBP13.92□□□□□ -0.18
UPF3A-208ENST00000484246 GSC2O15499 205 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 BCL10O95999 233 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 IGHG1P01857 330 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 RRM2P31350 389 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 GPR4P46093 362 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 CAMK2DQ13557 499 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 GK3PQ14409 553 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ACKR1Q16570 336 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 HIST3H3Q16695 136 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 CEACAM16Q2WEN9 425 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 TBRG1Q3YBR2 411 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 PHYHD1Q5SRE7 291 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 FBXW10Q5XX13 1052 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ADAM5Q6NVV9 412 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 PAMR1Q6UXH9 720 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 OAFQ86UD1 273 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ADGRG5Q8IZF4 528 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 FAM169BQ8N8A8 192 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 OR13C2Q8NGS9 318 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ZNF566Q969W8 418 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 PLPPR2Q96GM1 343 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 LRGUKQ96M69 825 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 GPX7Q96SL4 187 aaPredicted RBP13.92□□□□□ -0.18
UPF3A-208ENST00000484246 CADM1Q9BY67 442 aaKnown RBP13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ULBP2Q9BZM5 246 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 NDEL1Q9GZM8 345 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 LRMDAQ9H2I8 198 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 MMADHCQ9H3L0 296 aaPredicted RBP13.92□□□□□ -0.18
UPF3A-208ENST00000484246 TXNIPQ9H3M7 391 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 ESRP2Q9H6T0 727 aaKnown RBP13.92□□□□□ -0.18
UPF3A-208ENST00000484246 CRLF2Q9HC73 371 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 GLTPQ9NZD2 209 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 LYVE1Q9Y5Y7 322 aa13.92□□□□□ -0.18
UPF3A-208ENST00000484246 FREM1Q5H8C1 2179 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 SERPINI2O75830 405 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 F13BP05160 661 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 RAP2AP10114 183 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 FPR3P25089 353 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 HOXC12P31275 282 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 CHRNB3Q05901 458 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 FOXD4Q12950 439 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-208ENST00000484246 MELKQ14680 651 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 C3orf36Q3SXR2 165 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 ZBED5Q49AG3 693 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 C9orf135Q5VTT2 229 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 KLHL24Q6TFL4 600 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 CCDC36Q8IYA8 594 aa13.91□□□□□ -0.18
UPF3A-208ENST00000484246 LINC00471Q8N535 108 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms