RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 OR5W2Q8NH69 310 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 ACOT11Q8WXI4 607 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-205ENST00000392004 ABHD17AQ96GS6 310 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 LIN37Q96GY3 246 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-205ENST00000392004 PRRC1Q96M27 445 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 OR5M11Q96RB7 305 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 B3GAT2Q9NPZ5 323 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 SEC14L4Q9UDX3 406 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 CHRNA9Q9UGM1 479 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 MGAT4BQ9UQ53 548 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 EXO1Q9UQ84 846 aaKnown RBP9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TMEM5Q9Y2B1 443 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 FANCMQ8IYD8 2048 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TRGV5A0A0B4J1U4 118 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TEX13CA0A0J9YWL9 993 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 OR5H15A6NDH6 313 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 GJE1A6NN92 205 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 H0YC42 278 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 MSL3P1P0C860 447 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 FOSL1P15407 271 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 IL32P24001 234 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 P2RX1P51575 399 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 OR12D2P58182 307 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 RNASE12Q5GAN4 147 aaKnown RBP9.36□□□□□ -0.91
COL6A3-205ENST00000392004 CARFQ8N187 725 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 OR2L13Q8N349 312 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 THAP4Q8WY91 577 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TM4SF19Q96DZ7 209 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 Q96M85 177 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TSSK2Q96PF2 358 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 SIGLEC11Q96RL6 698 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 SERHL2Q9H4I8 314 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 SLC22A11Q9NSA0 550 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 TAS2R16Q9NYV7 291 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 NDUFAF4Q9P032 175 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 FBXL2Q9UKC9 423 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 ABCA2Q9BZC7 2435 aa9.36□□□□□ -0.91
COL6A3-205ENST00000392004 C1QTNF9BB2RNN3 333 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 NDUFB2O95178 105 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 C1QTNF9P0C862 333 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 PNMTP11086 282 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SNU13P55769 128 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SNTB1Q13884 538 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 POU4F3Q15319 338 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ARHGAP11BQ3KRB8 267 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF767PQ75MW2 155 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 TMEM99Q8N816 258 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 NPRL2Q8WTW4 380 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SECISBP2Q96T21 854 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 POLR2J2Q9GZM3 115 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SYT4Q9H2B2 425 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 PLEK2Q9NYT0 353 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 CSNK1A1P48729 337 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF84P51523 738 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 CRISP1P54107 249 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 CSNK2A1P68400 391 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 C19orf57Q0VDD7 668 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 FAPQ12884 760 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 C1orf140Q5VVS0 124 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 VASNQ6EMK4 673 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ZCCHC12Q6PEW1 402 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SMAP2Q8WU79 429 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 RASD2Q96D21 266 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 HS6ST2Q96MM7 605 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 NMNAT3Q96T66 252 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 STACQ99469 402 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 SNRNP200O75643 2136 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 FRG2CA6NGY1 282 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 IL2RAP01589 272 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ITGB2P05107 769 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 POLR2HP52434 150 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 PNLIPRP2P54317 469 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF117Q03924 483 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 RASGEF1BQ0VAM2 473 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 CXXC5Q7LFL8 322 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 LAX1Q8IWV1 398 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 LSM14AQ8ND56 463 aaKnown RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 PLPP5Q8NEB5 264 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 GOT1L1Q8NHS2 421 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-205ENST00000392004 RFKQ969G6 155 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 PNPLA2Q96AD5 504 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 LANCL2Q9NS86 450 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 HSPB11Q9Y547 144 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 CFAP54Q96N23 3096 aa9.35□□□□□ -0.91
COL6A3-205ENST00000392004 A0A087WV62 115 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 FAM240BA0A1B0GVZ2 78 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 CDRT1O95170 752 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 CT45A8P0DMV1 189 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 CT45A9P0DMV2 189 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 NBL1P41271 181 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ADAM8P78325 824 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 LSM11P83369 360 aaKnown RBP eCLIP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZFP36L1Q07352 338 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 BAK1Q16611 211 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 CT45A2Q5DJT8 189 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF468Q5VIY5 522 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 FAM198BQ6UWH4 519 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 GDPGP1Q6ZNW5 385 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 FJX1Q86VR8 437 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 LINC00346Q8IVM7 164 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms