RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SHQ1Q6PI26 577 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 LRFN4Q6PJG9 635 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 KLHL17Q6TDP4 642 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 STAC2Q6ZMT1 411 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 LUZP2Q86TE4 346 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 OAFQ86UD1 273 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 GPAT4Q86UL3 456 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 IGFN1Q86VF2 1251 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 ZNF519Q8TB69 540 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 CA5BP1Q8WTZ4 195 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 TMEM54Q969K7 222 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 RSRC1Q96IZ7 334 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 RAB3IPQ96QF0 476 aaPredicted RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 GPX7Q96SL4 187 aaPredicted RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 DDOQ99489 341 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 FEVQ99581 238 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 PLA2G12AQ9BZM1 189 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 REEP1Q9H902 201 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 NRIP3Q9NQ35 241 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 IL20Q9NYY1 176 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 COQ3Q9NZJ6 369 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 ZNF346Q9UL40 294 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 TMEM5Q9Y2B1 443 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 NOSIPQ9Y314 301 aaKnown RBP9.33□□□□□ -0.92
LIG1-210ENST00000596332 EMC9Q9Y3B6 208 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 NOX1Q9Y5S8 564 aa9.33□□□□□ -0.92
LIG1-210ENST00000596332 SPTBN1Q01082 2364 aaKnown RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 HCFC1P51610 2035 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 IGKV1D-43A0A0B4J1Z2 117 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 E9PQ18 207 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 IMPA2O14732 288 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 CCNB2O95067 398 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 PLGP00747 810 aaPredicted RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 IGHV3-9P01782 118 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 IGHMP01871 453 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ITGA5P08648 1049 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 POU2F1P14859 743 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ZNF43P17038 809 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 IGHV1-2P23083 117 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 FASP25445 335 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 COL8A1P27658 744 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ASCL1P50553 236 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 DBPQ10586 325 aaPredicted RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 SNTB1Q13884 538 aaKnown RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 MELKQ14680 651 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ACKR1Q16570 336 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 RFX4Q33E94 735 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ANKDD1AQ495B1 522 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 TMEM201Q5SNT2 666 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 FBXW9Q5XUX1 488 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 SEZ6L2Q6UXD5 910 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 Q6ZT83 130 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 SLC35D2Q76EJ3 337 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 AAED1Q7RTV5 226 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 NANOGNBQ7Z5D8 188 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 MCEMP1Q8IX19 187 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 C20orf196Q8IYI0 205 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 AQP11Q8NBQ7 271 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 OR10G2Q8NGC3 310 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 OR6X1Q8NH79 312 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 GNPDA2Q8TDQ7 276 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 GIPC3Q8TF64 312 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ASB10Q8WXI3 467 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 NRBF2Q96F24 287 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 BOD1Q96IK1 185 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 TSPAN32Q96QS1 320 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 KCNK17Q96T54 332 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 TACO1Q9BSH4 297 aaKnown RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 EGLN3Q9H6Z9 239 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 KCNJ16Q9NPI9 418 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 GALNT8Q9NY28 637 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 PDP1Q9P0J1 537 aaPredicted RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 MALT1Q9UDY8 824 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 IL20RAQ9UHF4 553 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 TMEFF2Q9UIK5 374 aaPredicted RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 PROCRQ9UNN8 238 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 RCE1Q9Y256 329 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 ADAM18Q9Y3Q7 739 aa9.32□□□□□ -0.92
LIG1-210ENST00000596332 KLF2Q9Y5W3 355 aaPredicted RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 SPTAN1Q13813 2472 aaKnown RBP9.32□□□□□ -0.92
LIG1-210ENST00000596332 RPL36A-HNRNPH2H7BZ11 118 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 BHLHE40O14503 412 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 RNF13O43567 381 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 MRPL33O75394 65 aaKnown RBP9.31□□□□□ -0.92
LIG1-210ENST00000596332 DEAF1O75398 565 aaPredicted RBP9.31□□□□□ -0.92
LIG1-210ENST00000596332 SMNDC1O75940 238 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIG1-210ENST00000596332 TXNDC12O95881 172 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 THBDP07204 575 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 PGA4P0DJD7 388 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 PGA3P0DJD8 388 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 SAGP10523 405 aaPredicted RBP9.31□□□□□ -0.92
LIG1-210ENST00000596332 COX5AP20674 150 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 AHCYP23526 432 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 ZNF133P52736 654 aaPredicted RBP9.31□□□□□ -0.92
LIG1-210ENST00000596332 BIDP55957 195 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 CTXN1P60606 82 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 ERVK-25P63136 954 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 ELF3P78545 371 aaPredicted RBP9.31□□□□□ -0.92
LIG1-210ENST00000596332 TSC22D1Q15714 1073 aa9.31□□□□□ -0.92
LIG1-210ENST00000596332 ALG10Q5BKT4 473 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms