RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	FAM110B	Q8TC76	370 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	BAD	Q92934	168 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SLCO2A1	Q92959	643 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	MARC2	Q969Z3	335 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	TESC	Q96BS2	214 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CMTM5	Q96DZ9	223 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PDXP	Q96GD0	296 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ART5	Q96L15	291 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GPR174	Q9BXC1	333 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ANKRD60	Q9BZ19	345 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	NMUR2	Q9GZQ4	415 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	LHX5	Q9H2C1	402 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	DDX31	Q9H8H2	851 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ADGRL4	Q9HBW9	690 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ANKH	Q9HCJ1	492 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SLC17A5	Q9NRA2	495 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	C20orf96	Q9NUD7	363 aa	Predicted RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GLTP	Q9NZD2	209 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RIMS3	Q9UJD0	308 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ICAM5	Q9UMF0	924 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PRPF19	Q9UMS4	504 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	POMP	Q9Y244	141 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	POLDIP2	Q9Y2S7	368 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PRELID3B	Q9Y3B1	194 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	TIMM10B	Q9Y5J6	103 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CLUH	O75153	1309 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	MYH4	Q9Y623	1939 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PLCH1	Q4KWH8	1693 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	DDX60	Q8IY21	1712 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	IGKV2D-30	A0A075B6S6	120 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595		A0A087X0T9	212 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	LINC00862	A6NCI5	91 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	EFCAB10	A6NFE3	127 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	INPP4B	O15327	924 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	KLRC4	O43908	158 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PSIP1	O75475	530 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	SORBS2	O94875	1100 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	SEMA3D	O95025	777 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	DEXI	O95424	95 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	POP4	O95707	220 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	CST1	P01037	141 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ALPL	P05186	524 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	SP1	P08047	785 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	HPGD	P15428	266 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PGC	P20142	388 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	EDNRA	P25101	427 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	UCP1	P25874	307 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	CCKAR	P32238	428 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	RPA3	P35244	121 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	STAR	P49675	285 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ARHGDIA	P52565	204 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ATP1B3	P54709	279 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MYL6	P60660	151 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	FLI1	Q01543	452 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	OTUD4	Q01804	1114 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	BDH1	Q02338	343 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	RGS1	Q08116	209 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	EMC2	Q15006	297 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	TP53I3	Q53FA7	332 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	FAM76B	Q5HYJ3	339 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ATAD3C	Q5T2N8	411 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	SEL1L2	Q5TEA6	688 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	DCUN1D2	Q6PH85	259 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ADAMTSL5	Q6ZMM2	481 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	C9orf47	Q6ZRZ4	202 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	HSD11B1L	Q7Z5J1	315 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	LUZP2	Q86TE4	346 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PAQR7	Q86WK9	346 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	CATSPER3	Q86XQ3	398 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NUDCD3	Q8IVD9	361 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	CTAGE3P	Q8IX95	158 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	LINC01561	Q8N1V8	128 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PACRGL	Q8N7B6	248 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	UBL4B	Q8N7F7	174 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PRELID2	Q8N945	189 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF565	Q8N9K5	539 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MFSD9	Q8NBP5	474 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	SDR9C7	Q8NEX9	313 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	OR5T2	Q8NGG2	359 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	OR13F1	Q8NGS4	319 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	OR6F1	Q8NGZ6	308 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	PCNP	Q8WW12	178 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	DNAJA4	Q8WW22	397 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ZNRF4	Q8WWF5	429 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	MYDGF	Q969H8	173 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NTNG2	Q96CW9	530 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	DNAJA3	Q96EY1	480 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	BTN2A3P	Q96KV6	586 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	TNFRSF13C	Q96RJ3	184 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	COPS8	Q99627	209 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NXF5	Q9H1B4	397 aa	Known RBP	4.12	□□□□□ -1.75
SS18-223	ENST00000583595	FAM96A	Q9H5X1	160 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM185B	Q9H7F4	350 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	NT5DC2	Q9H857	520 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	EFCAB1	Q9HAE3	211 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF556	Q9HAH1	456 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	IFT46	Q9NQC8	304 aa		4.12	□□□□□ -1.75
SS18-223	ENST00000583595	FBXO8	Q9NRD0	319 aa		4.12	□□□□□ -1.75

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