RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 OR10D3Q8NH80 312 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF519Q8TB69 540 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SNX18Q96RF0 628 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 NMNAT3Q96T66 252 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 DDOQ99489 341 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 COPS4Q9BT78 406 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 SRXN1Q9BYN0 137 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 EXO5Q9H790 373 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 PAK1IP1Q9NWT1 392 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-209ENST00000573474 B3GAT1Q9P2W7 334 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 ERVK-18Q9QC07 812 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 NPIPA1Q9UND3 350 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 B3GNT3Q9Y2A9 372 aa12.25□□□□□ -0.45
CCDC40-209ENST00000573474 MED19A0JLT2 244 aaPredicted RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 TMEM8BA6NDV4 472 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 A6NIZ1 184 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 TRIM64CA6NLI5 447 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF814B7Z6K7 855 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 H0YC42 278 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CACNA1AO00555 2505 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 XKRYO14609 159 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 RGS10O43665 173 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CXCL13O43927 109 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 BCL10O95999 233 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CLPTM1O96005 669 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 RENP00797 406 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 IGHG3P01860 377 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 DBTP11182 482 aaKnown RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 HLA-DOBP13765 273 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 IFNGR1P15260 489 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ATP6V1B1P15313 513 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF708P17019 499 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ENPP1P22413 925 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 EIF1AXP47813 144 aaKnown RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 SLC25A1P53007 311 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CDH11P55287 796 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CLDN15P56746 228 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CLDN18P56856 261 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 RAP1BP61224 184 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 RAP1AP62834 184 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF91Q05481 1191 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 TMED1Q13445 227 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 C1DQ13901 141 aaKnown RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 INAQ16352 499 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 KLHL22Q53GT1 634 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 MESTQ5EB52 335 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ARMC4Q5T2S8 1044 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 VASNQ6EMK4 673 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 NIPAL3Q6P499 406 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 LEG1Q6P5S2 330 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 NHLRC1Q6VVB1 395 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 AHSA2Q719I0 299 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 SLC35D2Q76EJ3 337 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 ADCK1Q86TW2 530 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 BBS1Q8NFJ9 593 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 SGCDQ92629 289 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 HCAR1Q9BXC0 346 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 MED20Q9H944 212 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 MRPS18AQ9NVS2 196 aaKnown RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 PAQR5Q9NXK6 330 aaPredicted RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 WARS2Q9UGM6 360 aaKnown RBP12.24□□□□□ -0.45
CCDC40-209ENST00000573474 TP53TG5Q9Y2B4 290 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 SNX5Q9Y5X3 404 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 LIPGQ9Y5X9 500 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 CELSR3Q9NYQ7 3312 aa12.24□□□□□ -0.45
CCDC40-209ENST00000573474 IRGMA1A4Y4 181 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 OR6C68A6NDL8 312 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 SLC22A31A6NKX4 558 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 ARHGEF9O43307 516 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 CDK1P06493 297 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 HTR1AP08908 422 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 ZNF43P17038 809 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 MTNR1AP48039 350 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 RPS3AP61247 264 aaKnown RBP12.23□□□□□ -0.45
CCDC40-209ENST00000573474 POU3F1Q03052 451 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-209ENST00000573474 SRYQ05066 204 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 PIGFQ07326 219 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 LGALS3BPQ08380 585 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 ST3GAL4Q11206 333 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 RAB40BQ12829 278 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 POU4F3Q15319 338 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 PLEKHN1Q494U1 663 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-209ENST00000573474 KLHL12Q53G59 568 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 PRSS48Q7RTY5 328 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 HDDC2Q7Z4H3 204 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 GPAT4Q86UL3 456 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 STX19Q8N4C7 294 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 ASB10Q8WXI3 467 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 CPNE4Q96A23 557 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-209ENST00000573474 RNFT2Q96EX2 444 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 TEAD3Q99594 435 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 RHNO1Q9BSD3 238 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 NMNAT2Q9BZQ4 307 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 CCDC90BQ9GZT6 254 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 OR51V1Q9H2C8 321 aa12.23□□□□□ -0.45
CCDC40-209ENST00000573474 IGHV3-15A0A0B4J1V0 119 aa12.22□□□□□ -0.45
CCDC40-209ENST00000573474 A0A1B0GVC2 190 aa12.22□□□□□ -0.45
CCDC40-209ENST00000573474 PRSS37A4D1T9 235 aa12.22□□□□□ -0.45
CCDC40-209ENST00000573474 CCDC182A6NF36 153 aa12.22□□□□□ -0.45
CCDC40-209ENST00000573474 SMAD9O15198 467 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms