RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF91Q05481 1191 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PMPCAQ10713 525 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PCGF3Q3KNV8 242 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 C4orf17Q53FE4 359 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SPIN4Q56A73 249 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF782Q6ZMW2 699 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 MRGPRGQ86SM5 289 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 COMTD1Q86VU5 262 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CBR4Q8N4T8 237 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 DHRSXQ8N5I4 330 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 NKAIN3Q8N8D7 197 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 NUP43Q8NFH3 380 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF420Q8TAQ5 688 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PTP4A1Q93096 173 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PNPLA2Q96AD5 504 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 TEX37Q96LM6 180 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PTDSS2Q9BVG9 487 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PRRG4Q9BZD6 226 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 WWTR1Q9GZV5 400 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF700Q9H0M5 742 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 EIF3KQ9UBQ5 218 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 GOLT1BQ9Y3E0 138 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PCDHA9Q9Y5H5 950 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 CLDN24A6NM45 220 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 HCRTR2O43614 444 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC19A2O60779 497 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 NEURL1O76050 574 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 MT-ND1P03886 318 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 HMGN2P05204 90 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 S100A3P33764 101 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 HOXC5Q00444 222 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 AGKQ53H12 422 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 NCMAPQ5T1S8 102 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 OGFRL1Q5TC84 451 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 PLET1Q6UQ28 207 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 LRRC17Q8N6Y2 441 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 PLPP5Q8NEB5 264 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 UBTD2Q8WUN7 234 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 CHTF18Q8WVB6 975 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 OR52E6Q96RD3 313 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ING4Q9UNL4 249 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 HSBP1L1C9JCN9 74 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 KLRC4-KLRK1H3BQV0 150 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC28A1O00337 649 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SULT1C2O00338 296 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 STX11O75558 287 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 UPK1BO75841 260 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SNAPINO95295 136 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ADORA3P0DMS8 318 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 TMIGD3P0DMS9 266 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 PAICSP22234 425 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ABCD3P28288 659 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 MAP3K8P41279 467 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 TAS2R60P59551 318 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 GAB1Q13480 694 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 PGBD2Q6P3X8 592 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 GK5Q6ZS86 529 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SH2D5Q6ZV89 423 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SPPL2CQ8IUH8 684 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 LYSMD2Q8IV50 215 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 OR14A16Q8NHC5 309 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 CDS1Q92903 461 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 APOL4Q9BPW4 351 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 DUSP26Q9BV47 211 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 FUNDC2Q9BWH2 189 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 MFFQ9GZY8 342 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC26A1Q9H2B4 701 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 KCNE3Q9Y6H6 103 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 FRS3O43559 492 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 KLK8O60259 260 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SMIM10L1P0DMW3 83 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 NCS1P62166 190 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SNAPC1Q16533 368 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ADPRMQ3LIE5 342 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 VPS26BQ4G0F5 336 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF787Q6DD87 383 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ZAR1Q86SH2 424 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF721Q8TF20 911 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 RORBQ92753 470 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 L3HYPDHQ96EM0 354 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 SMIM10Q96HG1 83 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 OR51M1Q9H341 326 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 DKKL1Q9UK85 242 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 MMACHCQ9Y4U1 282 aa7.17□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF106Q9H2Y7 1883 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 NBPF19A0A087WUL8 3843 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 IGLV3-12A0A075B6K2 115 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 NKX2-6A6NCS4 301 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM74A7A6NL05 159 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 ACOT7O00154 380 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 PRRG2O14669 202 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 UBDO15205 165 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 TCF21O43680 179 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC25A17O43808 307 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 GOSR1O95249 250 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 CYB5R3P00387 301 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 SERPINA3P01011 423 aa7.16□□□□□ -1.26
LIMCH1-219ENST00000514096 IGHV3-9P01782 118 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms