RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CCDC182A6NF36 153 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 MCIDASD6RGH6 385 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 NDUFB2O95178 105 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 RBMS1P29558 406 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 SCN1BQ07699 218 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 Q0VFX4 171 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 SRSF6Q13247 344 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 SSPNQ14714 243 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 TMPRSS7Q7RTY8 843 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 DUSP19Q8WTR2 217 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 PTP4A1Q93096 173 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 KISS1RQ969F8 398 aaPredicted RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 WDFY2Q96P53 400 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 MOGAT1Q96PD6 335 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 DEFB126Q9BYW3 111 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 ISG20L2Q9H9L3 353 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 ASCL3Q9NQ33 180 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 CDV3Q9UKY7 258 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF337Q9Y3M9 751 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 SPTBN4Q9H254 2564 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 CDRT15L2A8MXV6 281 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 IL1AP01583 271 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 PEPDP12955 493 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 NAT1P18440 290 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 PGCP20142 388 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MYL9P24844 172 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 ITPKBP27987 946 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 NOS3P29474 1203 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 CBFBQ13951 182 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 QPRTQ15274 297 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 RSPO4Q2I0M5 234 aaPredicted RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 DDI2Q5TDH0 399 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 NDUFAF7Q7L592 441 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 NUP54Q7Z3B4 507 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 KTI12Q96EK9 354 aaPredicted RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF649Q9BS31 505 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 SLC22A4Q9H015 551 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MMP25Q9NPA2 562 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 P4HTMQ9NXG6 502 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 FBXL4Q9UKA2 621 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 J3QRE1 110 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 CDC40O60508 579 aaKnown RBP eCLIP11□□□□□ -0.65
HDAC6-230ENST00000488543 FBXO45P0C2W1 286 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 PSKH1P11801 424 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 GP1BBP13224 206 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF24P17028 368 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 SLC2A5P22732 501 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 PTGDSP41222 190 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 CRMP1Q14194 572 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 COL28A1Q2UY09 1125 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 BICRALQ6AI39 1079 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 GDPGP1Q6ZNW5 385 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MEPCEQ7L2J0 689 aaKnown RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 KLBQ86Z14 1044 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MISPQ8IVT2 679 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 GID4Q8IVV7 300 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 SIRT6Q8N6T7 355 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 LRRC75AQ8NAA5 344 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 SLC37A3Q8NCC5 494 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MOSPD2Q8NHP6 518 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 SPRYD4Q8WW59 207 aaPredicted RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 SLC7A6Q92536 515 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 TTC9Q92623 222 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 UFD1Q92890 307 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 TTTY10Q9BZA0 68 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 NDEL1Q9GZM8 345 aa11□□□□□ -0.65
HDAC6-230ENST00000488543 MOV10Q9HCE1 1003 aaKnown RBP11□□□□□ -0.65
HDAC6-230ENST00000488543 ANKRD34BA5PLL1 514 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 CENPXA8MT69 81 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 IGHA1P01876 353 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ASAH2BP0C7U1 165 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 HK1P19367 917 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 SPINK2P20155 84 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 IL18Q14116 193 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 FAM27D1Q5T7N8 215 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ATP1A1-AS1Q5TC04 95 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 VASNQ6EMK4 673 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 OR5M10Q6IEU7 315 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ARHGAP11AQ6P4F7 1023 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 DTX1Q86Y01 620 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF485Q8NCK3 441 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 SETD6Q8TBK2 473 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 RNF170Q96K19 258 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ERMAPQ96PL5 475 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-230ENST00000488543 GPX7Q96SL4 187 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-230ENST00000488543 SLX1AQ9BQ83 275 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 OR2B2Q9GZK3 357 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 GALNT9Q9HCQ5 603 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 HIF3AQ9Y2N7 669 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 EXOSC1Q9Y3B2 195 aaKnown RBP10.99□□□□□ -0.65
HDAC6-230ENST00000488543 IER3IP1Q9Y5U9 82 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 A0A1W2PQ72 361 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 TMEM129A0AVI4 362 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 RIIAD1A6NNX1 92 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 BGLAPP02818 100 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 ASAH1Q13510 395 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 XKRXQ6PP77 449 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 DPY19L2P2Q6ZN68 376 aa10.99□□□□□ -0.65
HDAC6-230ENST00000488543 VASH2Q86V25 355 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms