RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CRLF1	O75462	422 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	TNFSF13	O75888	250 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	KRT36	O76013	467 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	AHSA1	O95433	338 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	TGM6	O95932	706 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	RAP2A	P10114	183 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	FUT4	P22083	530 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	RRM2	P31350	389 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	IFNGR2	P38484	337 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	CDH12	P55289	794 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	CLDN15	P56746	228 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	OR2B6	P58173	313 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	PIN1	Q13526	163 aa	Predicted RBP	7.76	□□□□□ -1.17
USP4-213	ENST00000488520	TRAM2	Q15035	370 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	NPTX1	Q15818	432 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	FXN	Q16595	210 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	HMBOX1	Q6NT76	420 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	PIK3C3	Q8NEB9	887 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	OR2V1	Q8NHB1	315 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	POC1B	Q8TC44	478 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	OSTF1	Q92882	214 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	STMN2	Q93045	179 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	SLC38A4	Q969I6	547 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	KLHL15	Q96M94	604 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ZFP3	Q96NJ6	502 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF300	Q96RE9	604 aa	Predicted RBP	7.76	□□□□□ -1.17
USP4-213	ENST00000488520	POTEKP	Q9BYX7	375 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	KLHL4	Q9C0H6	718 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	OPN3	Q9H1Y3	402 aa	Predicted RBP	7.76	□□□□□ -1.17
USP4-213	ENST00000488520	IL1RAP	Q9NPH3	570 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF226	Q9NYT6	803 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	CLCF1	Q9UBD9	225 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	HDGFL3	Q9Y3E1	203 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ENPP4	Q9Y6X5	453 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	7.75	□□□□□ -1.17	5e-7	■■■■■ 29.7
USP4-213	ENST00000488520	NBEAL1	Q6ZS30	2694 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520		A0A087WUJ7	227 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520		A0A0B4J2E0	115 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520		A0A1B0GX12	115 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM72	A0PK05	275 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	HTR3E	A5X5Y0	456 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TNFSF11	O14788	317 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	EIF1B	O60739	113 aa	Known RBP	7.75	□□□□□ -1.17
USP4-213	ENST00000488520	OR6A2	O95222	327 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	GADD45G	O95257	159 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	PLG	P00747	810 aa	Predicted RBP	7.75	□□□□□ -1.17
USP4-213	ENST00000488520	CST1	P01037	141 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	H1F0	P07305	194 aa	Known RBP	7.75	□□□□□ -1.17
USP4-213	ENST00000488520	POU2F1	P14859	743 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	ATP6V1B2	P21281	511 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	ENPP1	P22413	925 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	CRYGS	P22914	178 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	IDUA	P35475	653 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	CD79B	P40259	229 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	LHX2	P50458	406 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	B3GALT5-AS1	P59052	145 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	SIRPA	P78324	504 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	SLC35A1	P78382	337 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	IL1RL1	Q01638	556 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	SPIB	Q01892	262 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	MFSD13A	Q14CX5	517 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	NKPD1	Q17RQ9	610 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM44	Q2T9K0	475 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	SYT14P1	Q58G82	188 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	FGD3	Q5JSP0	725 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF730	Q6ZMV8	503 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TMPPE	Q6ZT21	453 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	C22orf34	Q6ZV56	151 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	ADGRE4P	Q86SQ3	457 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	ATG4D	Q86TL0	474 aa	Predicted RBP	7.75	□□□□□ -1.17
USP4-213	ENST00000488520	PHC2	Q8IXK0	858 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	RNF113B	Q8IZP6	322 aa	Known RBP	7.75	□□□□□ -1.17
USP4-213	ENST00000488520	LINC00471	Q8N535	108 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	OR4D11	Q8NGI4	311 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	OR52J3	Q8NH60	311 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM239	Q8WW34	195 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	C3orf49	Q96BT1	292 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	SLC25A36	Q96CQ1	311 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	STARD4	Q96DR4	205 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	PRRC1	Q96M27	445 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	CHID1	Q9BWS9	393 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	REEP1	Q9H902	201 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	RHCG	Q9UBD6	479 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	TRAPPC4	Q9Y296	219 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	MED31	Q9Y3C7	131 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	AP4S1	Q9Y587	144 aa		7.75	□□□□□ -1.17
USP4-213	ENST00000488520	NUP214	P35658	2090 aa	Predicted RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TRAV36DV7	A0A075B6V5	113 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520		A0A0J9YW62	118 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TCRBV5S2	A0A599	114 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520		H0YHG0	523 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520		J3KTA2	159 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	TNFRSF11B	O00300	401 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ETV2	O00321	342 aa	Predicted RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	ADAMDEC1	O15204	470 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	RRP9	O43818	475 aa	Known RBP	7.74	□□□□□ -1.17
USP4-213	ENST00000488520	CXCL13	O43927	109 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	E2F6	O75461	281 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	NTN1	O95631	604 aa		7.74	□□□□□ -1.17
USP4-213	ENST00000488520	PLAU	P00749	431 aa		7.74	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms