RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HOXC4P09017 264 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 EPHA8P29322 1005 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF81P51508 661 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 MEP1BQ16820 701 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 UBE2FQ969M7 185 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 SORCS2Q96PQ0 1159 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 PRDM7Q9NQW5 492 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 MAN2C1Q9NTJ4 1040 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 PCDHB10Q9UN67 800 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 BCKDHBP21953 392 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 RNF4P78317 190 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 GPNMBQ14956 572 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 CFAP77Q6ZQR2 320 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF709Q8N972 641 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 APH1AQ96BI3 265 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 OR14J1Q9UGF5 321 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 COA3Q9Y2R0 106 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 PAPLNO95428 1278 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 ITGB2P05107 769 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 FOLR1P15328 257 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 KIR2DL1P43626 348 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 RPL27P61353 136 aaKnown RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 PPA1Q15181 289 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 FAM199XQ6PEV8 388 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 ACBD4Q8NC06 268 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 OR52I1Q8NGK6 324 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 SYT3Q9BQG1 590 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 IER2Q9BTL4 223 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 AGAP5A6NIR3 686 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 SLC16A6O15403 523 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 TIMM8AO60220 97 aaPredicted RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 RFC3P40938 356 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 DEFB124Q8NES8 71 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 RPL3LQ92901 407 aaKnown RBP13.67□□□□□ -0.22
COL17A1-201ENST00000353479 MUL1Q969V5 352 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 APMAPQ9HDC9 416 aa13.67□□□□□ -0.22
COL17A1-201ENST00000353479 FCGR2AP12318 317 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 PPIAP62937 165 aaKnown RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 LANCL3Q6ZV70 420 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 DTWD2Q8NBA8 298 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 OR1L3Q8NH93 324 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 PPP1R14BQ96C90 147 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 DIMT1Q9UNQ2 313 aaKnown RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF736B4DX44 427 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 P2RY10O00398 339 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 BPNT1O95861 308 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 CD34P28906 385 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 GABRA5P31644 462 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 EMDP50402 254 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 SEC61A1P61619 476 aaKnown RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 SPCS2Q15005 226 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 PRTGQ2VWP7 1150 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF684Q5T5D7 378 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 UCN3Q969E3 161 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 RRNAD1Q96FB5 475 aaKnown RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 WWTR1Q9GZV5 400 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 NAA50Q9GZZ1 169 aaKnown RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 TSPAN10Q9H1Z9 355 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 PRAMEF27A3QJZ7 478 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 FRG2CA6NGY1 282 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 LTBQ06643 244 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 UBE2UQ5VVX9 321 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 BEST3Q8N1M1 668 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 CHST11Q9NPF2 352 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 NEU3Q9UQ49 428 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 PCDHGA1Q9Y5H4 931 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 SMCO3A2RU48 225 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF701M0R085 212 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 ADAM23O75077 832 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 GABRA2P47869 451 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 MTCP1P56278 107 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 DCXRQ7Z4W1 244 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 ADAMTS14Q8WXS8 1223 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 GCDHQ92947 438 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-201ENST00000353479 KCNN3Q9UGI6 736 aa13.66□□□□□ -0.22
COL17A1-201ENST00000353479 GLCEO94923 617 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 IGFBP1P08833 259 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-201ENST00000353479 PTOV1Q86YD1 416 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 OR1J2Q8NGS2 313 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 IL1F10Q8WWZ1 152 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 THAP7Q9BT49 309 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF225Q9UK10 706 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 MT-CO3P00414 261 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 PNLIPRP2P54317 469 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 HSF1Q00613 529 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 ZNF793Q6ZN11 406 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 TMEM106AQ96A25 262 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 MIB2Q96AX9 1013 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 BCL2L10Q9HD36 194 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 NPSR1Q6W5P4 371 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 FCRLAQ7L513 359 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 SLC43A2Q8N370 569 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 RHOXF1Q8NHV9 184 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 OR5M11Q96RB7 305 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 B4DXG7 233 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 GAPDHSO14556 408 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-201ENST00000353479 IL1AP01583 271 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 CSF1P09603 554 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 EFNA3P52797 238 aa13.65□□□□□ -0.22
COL17A1-201ENST00000353479 PPP1CAP62136 330 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms