RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TRAV1-2A0A0B4J238 106 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 NDUFB2O95178 105 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 F13BP05160 661 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 CELA2BP08218 269 aaPredicted RBP9.18□□□□□ -0.94
LIG3-201ENST00000262327 SPI1P17947 270 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 PSMB1P20618 241 aaKnown RBP9.18□□□□□ -0.94
LIG3-201ENST00000262327 RPL35P42766 123 aaKnown RBP9.18□□□□□ -0.94
LIG3-201ENST00000262327 TPMTP51580 245 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 ACTC1P68032 377 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 ACTA1P68133 377 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 SCRN3Q0VDG4 424 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 OR5M10Q6IEU7 315 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 RPL13AP3Q6NVV1 102 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 LEG1Q6P5S2 330 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 PARGQ86W56 976 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 CAMKVQ8NCB2 501 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 OR10AC1Q8NH08 325 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 OR1F2PQ96R84 312 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 NOX3Q9HBY0 568 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 UBQLN2Q9UHD9 624 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 SCP2D1Q9UJQ7 156 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 MMP17Q9ULZ9 603 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 PCDHGA5Q9Y5G8 931 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 HRH3Q9Y5N1 445 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 IFITM5A6NNB3 132 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 PLRG1O43660 514 aaKnown RBP9.18□□□□□ -0.94
LIG3-201ENST00000262327 SERPINA3P01011 423 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 OR2T7P0C7T2 308 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 CDK2P24941 298 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 AQP2P41181 271 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 AKR1D1P51857 326 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 MAP2K6P52564 334 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 S100A12P80511 92 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 COL28A1Q2UY09 1125 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 UBE2NLQ5JXB2 153 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 TMEM69Q5SWH9 247 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 ZNF613Q6PF04 617 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 FAM198BQ6UWH4 519 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 OR2T27Q8NH04 317 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 ANKRD9Q96BM1 317 aaPredicted RBP9.18□□□□□ -0.94
LIG3-201ENST00000262327 KLHDC3Q9BQ90 382 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 FAM60AQ9NP50 221 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 HRASLS2Q9NWW9 162 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 CFAP54Q96N23 3096 aa9.18□□□□□ -0.94
LIG3-201ENST00000262327 WDR87Q6ZQQ6 2873 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 A0A0A6YYC8 382 aaPredicted RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 C17orf51A8MQB3 221 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 I3L1I5 382 aaPredicted RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 DCTN6O00399 190 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 S100A6P06703 90 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 CXCL2P19875 107 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 CDKN2AP42771 156 aaKnown RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 PPM1FP49593 454 aaPredicted RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 BTG2P78543 158 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 SLC22A10Q63ZE4 541 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 CA13Q8N1Q1 262 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 MEIOBQ8N635 442 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 CSNK1A1LQ8N752 337 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 NPEPL1Q8NDH3 523 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 RCBTB1Q8NDN9 531 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 OR51A4Q8NGJ6 313 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 ASB12Q8WXK4 309 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 SGTBQ96EQ0 304 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 SFXN2Q96NB2 322 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 ELF4Q99607 663 aaPredicted RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 CCDC3Q9BQI4 270 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 OR5V1Q9UGF6 321 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 HEBP2Q9Y5Z4 205 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 TRAV20A0A0B4J274 112 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 URADA6NGE7 173 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 ZNF879B4DU55 563 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 TGFBR3LH3BV60 316 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 DOK2O60496 412 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 KRT33AO76009 404 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 IFNA7P01567 189 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 C1orf61Q13536 156 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 ZNF273Q14593 569 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 MELKQ14680 651 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 OPCMLQ14982 345 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 C2orf68Q2NKX9 166 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 RPL22L1Q6P5R6 122 aaKnown RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 ALKAL2Q6UX46 152 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 TMPRSS12Q86WS5 348 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 KLHL15Q96M94 604 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 HAO2Q9NYQ3 351 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 TAS2R10Q9NYW0 307 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 IKZF2Q9UKS7 526 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 PCOLCE2Q9UKZ9 415 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 MRPS17Q9Y2R5 130 aaKnown RBP9.17□□□□□ -0.94
LIG3-201ENST00000262327 ENTPD2Q9Y5L3 495 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 SPACA6W5XKT8 324 aa9.17□□□□□ -0.94
LIG3-201ENST00000262327 A0A1W2PPL8 197 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 LINC00587B1AMM8 73 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 CHURC1-FNTBB4DL54 471 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 KHNYNO15037 678 aaKnown RBP9.16□□□□□ -0.94
LIG3-201ENST00000262327 NDUFS6O75380 124 aaKnown RBP9.16□□□□□ -0.94
LIG3-201ENST00000262327 CSTAP01040 98 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 RLN1P04808 185 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 ADRA2CP18825 462 aa9.16□□□□□ -0.94
LIG3-201ENST00000262327 CD53P19397 219 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms