RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 RCE1Q9Y256 329 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 CBX7O95931 251 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 TPT1P13693 172 aaKnown RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 TEAD1P28347 426 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 TRIM23P36406 574 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 CAPZBP47756 277 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 BDH1Q02338 343 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 ZNF813Q6ZN06 617 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 CD163Q86VB7 1156 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 PRMT8Q9NR22 394 aaPredicted RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 PAPPA2Q9BXP8 1791 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 ABHD16AO95870 558 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 BLOC1S1P78537 153 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 OR52I1Q8NGK6 324 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 LRFN5Q96NI6 719 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 CALHM2Q9HA72 323 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 TXNL4BQ9NX01 149 aaKnown RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 PRRC2BQ5JSZ5 2229 aaKnown RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 CTDSP2O14595 271 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 OR7C1O76099 320 aaPredicted RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 VAMP5O95183 116 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 TRMT12Q53H54 448 aaKnown RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 MORN4Q8NDC4 146 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 GJC3Q8NFK1 279 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 OR56B4Q8NH76 319 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 SDF2Q99470 211 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 ZNF649Q9BS31 505 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 SIAEQ9HAT2 523 aa17.48■□□□□ 0.39
PTPRE-201ENST00000254667 MRPS28Q9Y2Q9 187 aaKnown RBP17.48■□□□□ 0.39
PTPRE-201ENST00000254667 A0A087WUU8 490 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 G3V3Y1 287 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 ALDOBP05062 364 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 CATR1Q13166 79 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 ESPNLQ6ZVH7 1005 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 RAB3CQ96E17 227 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 FBXO7Q9Y3I1 522 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 PCDHGA1Q9Y5H4 931 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 SOCS6O14544 535 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 MMP11P24347 488 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 S100A12P80511 92 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 RBMS2Q15434 407 aaKnown RBP17.47■□□□□ 0.39
PTPRE-201ENST00000254667 SFXN4Q6P4A7 337 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 LIN7BQ9HAP6 207 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 TMEM100Q9NV29 134 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 TIMM8AO60220 97 aaPredicted RBP17.47■□□□□ 0.39
PTPRE-201ENST00000254667 WNT11O96014 354 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 IFNA4P05014 189 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 TFAP2AP05549 437 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 SNRPD2P62316 118 aaKnown RBP17.47■□□□□ 0.39
PTPRE-201ENST00000254667 ZNF775Q96BV0 537 aaPredicted RBP17.47■□□□□ 0.39
PTPRE-201ENST00000254667 B3GALT4O96024 378 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 CDK4P11802 303 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 APOOLQ6UXV4 268 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 MSI2Q96DH6 328 aaKnown RBP17.47■□□□□ 0.39
PTPRE-201ENST00000254667 PSD2Q9BQI7 771 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 TEX101Q9BY14 249 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 SLC19A3Q9BZV2 496 aa17.47■□□□□ 0.39
PTPRE-201ENST00000254667 TRDV1A0A1B0GX56 115 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 TNFRSF10AO00220 468 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 HMGN4O00479 90 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 PEX14O75381 377 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 CLDN6P56747 220 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 TNK1Q13470 666 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 CYHR1Q6ZMK1 362 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 UPRTQ96BW1 309 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 PTTG3PQ9NZH4 202 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 KIF25Q9UIL4 384 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 CSO75390 466 aaKnown RBP17.46■□□□□ 0.39
PTPRE-201ENST00000254667 UBL3O95164 117 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 UBBP0CG47 229 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 PPICP45877 212 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 RPL27P61353 136 aaKnown RBP17.46■□□□□ 0.39
PTPRE-201ENST00000254667 CD300LGQ6UXG3 332 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 OR14K1Q8NGZ2 314 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 PPA2Q9H2U2 334 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 SLCO5A1Q9H2Y9 848 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 SNX11Q9Y5W9 270 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 NFYAP23511 347 aaPredicted RBP17.46■□□□□ 0.39
PTPRE-201ENST00000254667 CHRNB4P30926 498 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 GABRA2P47869 451 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 MEP1BQ16820 701 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 C17orf50Q8WW18 174 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 ZNF780AO75290 641 aaPredicted RBP17.46■□□□□ 0.39
PTPRE-201ENST00000254667 HLA-AP01891 365 aaKnown RBP17.46■□□□□ 0.39
PTPRE-201ENST00000254667 RAB5BP61020 215 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 OR6V1Q8N148 313 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 OR14J1Q9UGF5 321 aa17.46■□□□□ 0.39
PTPRE-201ENST00000254667 PRAMEF27A3QJZ7 478 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 SNRPBP14678 240 aaKnown RBP17.45■□□□□ 0.38
PTPRE-201ENST00000254667 CCR2P41597 374 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 VEGFCP49767 419 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 PPP2CBP62714 309 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 PPP2CAP67775 309 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 DUSP8Q13202 625 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 SYT6Q5T7P8 510 aaPredicted RBP17.45■□□□□ 0.38
PTPRE-201ENST00000254667 PRAMEF9Q5VWM5 478 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 LPCAT3Q6P1A2 487 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 CSF3RQ99062 836 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 B3GAT1Q9P2W7 334 aa17.45■□□□□ 0.38
PTPRE-201ENST00000254667 A0A087WV62 115 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms