RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 LYPD8Q6UX82 237 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 DTX3Q8N9I9 347 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OR51V1Q9H2C8 321 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FGF20Q9NP95 211 aaPredicted RBP11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 EXOSC1Q9Y3B2 195 aaKnown RBP11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 V9GYH0 126 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PCNX3Q9H6A9 2034 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CACNA1CQ13936 2221 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SPTBN4Q9H254 2564 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A0A0B4J2E0 115 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A0A1B0GX12 115 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TERTO14746 1132 aaKnown RBP11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GUSBP08236 651 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LIMS3P0CW19 117 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LIMS4P0CW20 117 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC9A3P48764 834 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FXYD6P3P58550 94 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RUNX1T1Q06455 604 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GPR50Q13585 617 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 THSD4Q6ZMP0 1018 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RNF113BQ8IZP6 322 aaKnown RBP11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 UFD1Q92890 307 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 HDHD5Q9BXW7 423 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MMP28Q9H239 520 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TNFRSF10DQ9UBN6 386 aa11.52□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MED12Q93074 2177 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ALG1L2C9J202 215 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RCBTB2O95199 551 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RAB40ALP0C0E4 278 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RBMS1P29558 406 aaKnown RBP11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 DDOSTP39656 456 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CRYZQ08257 329 aaKnown RBP11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CCDC58Q4VC31 144 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RNLSQ5VYX0 342 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ZNF613Q6PF04 617 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ZNF550Q7Z398 422 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OAFQ86UD1 273 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CYB561A3Q8NBI2 242 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FAM71CQ8NEG0 241 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM246Q9BRR3 403 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMED9Q9BVK6 235 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PLSCR3Q9NRY6 295 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MED11Q9P086 117 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC35A3Q9Y2D2 325 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A0A1W2PQ09 198 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 A0A1W2PQL4 384 aaPredicted RBP11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM129A0AVI4 362 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CENPXA8MT69 81 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ZNF670-ZNF695F2Z2N8 137 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FMO6PO60774 539 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MRPL3P09001 348 aaKnown RBP11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CPEP16870 476 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CELP19835 753 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RORCP51449 518 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 EXT1Q16394 746 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SMUG1Q53HV7 270 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMPRSS11AQ6ZMR5 421 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 OR8K3Q8NH51 312 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ZNF563Q8TA94 476 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 BRIX1Q8TDN6 353 aaKnown RBP11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC39A7Q92504 469 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 HGDQ93099 445 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 HCAR1Q9BXC0 346 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MMP25Q9NPA2 562 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ASCL3Q9NQ33 180 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MED17Q9NVC6 651 aa11.51□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SHISA3A0PJX4 238 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SHISA8B8ZZ34 492 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 SLC30A4O14863 429 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CHP2O43745 196 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ALX3O95076 343 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 PPP1R3DO95685 299 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ENDOUP21128 410 aaKnown RBP11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 HTR1FP30939 366 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FABP5Q01469 135 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CHAF1BQ13112 559 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM44Q2T9K0 475 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GXYLT1Q4G148 440 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CFAP161Q6P656 301 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GDPGP1Q6ZNW5 385 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GLCCI1Q86VQ1 547 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RPS19BP1Q86WX3 136 aaKnown RBP11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 LSMEM1Q8N8F7 131 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 C3orf49Q96BT1 292 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TTYH2Q9BSA4 534 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CCDC32Q9BV29 185 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TRIM2Q9C040 744 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MIXL1Q9H2W2 232 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MRPS18AQ9NVS2 196 aaKnown RBP11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 KLRF1Q9NZS2 232 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CRNNQ9UBG3 495 aaPredicted RBP11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 ICAM5Q9UMF0 924 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 TMEM5Q9Y2B1 443 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 CDRT15L2A8MXV6 281 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 GFRA3O60609 400 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 RFX2P48378 723 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FOXK1P85037 733 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 FOXK2Q01167 660 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 MDGA2Q7Z553 956 aa11.5□□□□□ -0.57
CDK5RAP3-217ENST00000580287 KLBQ86Z14 1044 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms